| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3618995 | NA (NA) | 4 (0.010) | 4/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 537 total aligned reads displayed.
CAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTT > CP009273/3618928‑3619062 | cAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCa < 1:3417188/68‑1 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:6969468‑M1/1‑64 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:26926307‑M1/1‑64 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:21314951‑M1/1‑64 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:7099858‑M1/1‑64 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:16672251‑M1/1‑64 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:29175974‑M1/67‑5 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:1196012‑M1/67‑5 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:25741062‑M1/67‑5 (MQ=255) ttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatg < 1:29355095‑M1/68‑7 (MQ=255) tGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgc < 1:12552601‑M1/68‑8 (MQ=255) gggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgcg < 1:1315341‑M1/68‑9 (MQ=255) ggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgt > 1:8172655‑M1/1‑59 (MQ=255) ggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgt > 1:10731703‑M1/1‑59 (MQ=255) gggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgta > 1:27504381‑M1/1‑58 (MQ=255) gTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCTATGCGTAGt < 1:21897594/68‑1 (MQ=255) tCAGTTGATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:20920616/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCTGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:19973040/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAgg < 1:21515710/67‑2 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:19157076/67‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:20517984/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:8997954/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:23064726/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:29785186/68‑1 (MQ=255) aGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTTGTcc < 1:1551302/67‑1 (MQ=255) ttCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:11602604‑M1/55‑5 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc < 1:24192273/65‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc < 1:11121720/65‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc < 1:10413491/65‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCtat > 1:28270025/1‑68 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCtat < 1:10024684/68‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:19607346/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:21162027/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:6697560/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:18736907/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:16441840/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:621362/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:15083408/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:14692752/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:14447145/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:745010/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:12910278/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:25405410/66‑1 (MQ=255) tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAg < 1:11496143/68‑1 (MQ=255) aaaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGc < 1:26422222/68‑1 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:26559677/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:4594571/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:28545201/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:18354805/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt < 1:5040969/68‑1 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:16001841/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt < 1:8647596/68‑1 (MQ=255) aaCGCATTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:18858977/1‑68 (MQ=255) ccTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTAC < 1:13665939‑M2/67‑1 (MQ=255) ccTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTAC < 1:10281085‑M2/67‑1 (MQ=255) tATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCAT > 1:23165584‑M2/1‑68 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:7695517‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:17895883‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:27788044‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:22506002‑M2/68‑1 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:5352189‑M2/1‑68 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:26307765‑M2/1‑68 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:14010677‑M2/68‑1 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:2257713‑M2/68‑1 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:22273828‑M2/1‑68 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:20794780‑M2/1‑68 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:25111770/68‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:16985256/68‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGAAGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:19034547/68‑1 (MQ=255) aacaacTAAAATTCATTAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt > 1:8477033/1‑68 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt < 1:15372989/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt < 1:3876141/68‑1 (MQ=255) aacaacTAAAATTCAACAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt > 1:3342933/1‑68 (MQ=255) acaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAtt > 1:6372858/1‑68 (MQ=255) aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc < 1:25957143/68‑1 (MQ=255) ttCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg < 1:20246070/68‑1 (MQ=255) ttCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg < 1:3191701/68‑1 (MQ=255) ttCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg > 1:24637421/1‑68 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:1082821/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:27152611/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:23648628/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:7242845/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:16268897/68‑1 (MQ=255) tCAATAAATTGCACCGACGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg > 1:1244416/1‑67 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:22975858/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:24839627/68‑1 (MQ=255) aaaTTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCaa > 1:24037366/1‑68 (MQ=255) aTTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTCCGCCATTGTCCCAATc > 1:9513653/1‑68 (MQ=255) aTTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATc > 1:15622149/1‑68 (MQ=255) tGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCg > 1:14216474/1‑67 (MQ=255) tGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGAAATTGTATTTACGCCATTGTCCCAATCGt < 1:17332927/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGtgcaatttattgaattttagttgtttttaggccg > 1:2992073‑M2/1‑34 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTTTATTTACTCCATTGTCCAAATAGTcgt > 1:23449753/1‑66 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt > 1:5884345/1‑68 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt < 1:28797459/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:16188774/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:7909410/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:4140352/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:362564/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:9308579/1‑67 (MQ=255) | CAGGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTT > CP009273/3618928‑3619062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |