| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3618995 | NA (NA) | 4 (0.010) | 4/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 571 total aligned reads displayed.
CCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > CP009273/3618961‑3619095 | ccGGCCTAATAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:4688225‑M2/1‑68 (MQ=255)ccGGCCTAAAATCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:28232071‑M2/1‑68 (MQ=255)ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:17346799‑M2/1‑68 (MQ=255)ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:17905602‑M2/1‑68 (MQ=255)ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCATAGTCCCTATAAGCTTACGCATCGG > 1:23467193‑M2/1‑68 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:14779887/68‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:21383948/68‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:25111770/68‑1 (MQ=255) tAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAtt < 1:14052979/68‑1 (MQ=255) aactacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt > 1:11169351/1‑68 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt > 1:18813590/1‑68 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGACGCGTAGGCCCTATAAGCTTACGCATCGGGCAATTGTAt < 1:298022/68‑1 (MQ=255) acaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAtt > 1:3357332/1‑68 (MQ=255) acaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAtt > 1:2780968/1‑68 (MQ=255) caacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAttt < 1:2183731/68‑1 (MQ=255) ttCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg < 1:29123132/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:16268897/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:22997686/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:3240329/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:1082821/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:22379590/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:22550260/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:10083707/68‑1 (MQ=255) aaTAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTcc < 1:23678831/68‑1 (MQ=255) aTTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATc > 1:16964859/1‑68 (MQ=255) ttGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCg > 1:19892273/1‑68 (MQ=255) tGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGt < 1:27021054/68‑1 (MQ=255) gCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTc < 1:20282757/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt < 1:28797459/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:24708328/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:4140352/1‑67 (MQ=255) tGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGa < 1:15610818/68‑1 (MQ=255) gCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGaa < 1:6207015/68‑1 (MQ=255) aGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgc > 1:29647293/1‑68 (MQ=255) gTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca > 1:5041321/1‑68 (MQ=255) gTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGGCCCAATCGTCGTCCTGAATCgcc > 1:5229007/1‑67 (MQ=255) tCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca > 1:311297/1‑67 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc < 1:26796363/68‑1 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc > 1:8206410/1‑68 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:6948085/66‑1 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:1375808/66‑1 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:24514010/1‑68 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:17113125/1‑68 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:23084233/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:16370970/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:12078938/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:12509382/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:11948756/1‑68 (MQ=255) gCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt > 1:27452878/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGGGATTGTCGCAATCGTGTTCGTGAATCGCAGCAGCGCAATg > 1:16535715/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:3516544/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:8786894/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:13512100/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:27356514/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:13185863/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:7230841/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:19133105/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:19401378/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:6610355/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:20830257/1‑68 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:8603234/66‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:3767880/66‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:2860722/68‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:11370450/68‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:9687752/68‑1 (MQ=255) aCGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccc > 1:21692909‑M2/1‑9 (MQ=255) aCGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccc < 1:15732159‑M2/67‑59 (MQ=255) aCGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccc < 1:25761235‑M2/67‑59 (MQ=255) aCGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTg < 1:16053357/68‑1 (MQ=255) cGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccccc < 1:9425628‑M2/68‑61 (MQ=255) gCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccccca < 1:26555952‑M2/68‑62 (MQ=255) gCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccccca < 1:5695740‑M2/68‑62 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:10228018/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:7528733/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:26317913/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:10580215/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:12816444/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:18680721/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:2404166/1‑68 (MQ=255) gCATCGGGCAATTGTAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:25423393/1‑68 (MQ=255) cATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaa < 1:29355095‑M2/68‑63 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:9190520/1‑68 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:20614905/1‑68 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:8450754/1‑68 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:14401191/1‑68 (MQ=255) aTCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaaa > 1:2098789/1‑68 (MQ=255) aTCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaaa > 1:8024922/1‑68 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:7099858‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:12599851‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:25990525‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:1530670‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:24861035‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:1974446‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:20140827‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:20469593‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:21279592‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:232064‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaa < 1:11602604‑M2/55‑52 (MQ=255) ggtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa < 1:16676758‑M2/66‑65 (MQ=255) ggCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGAGCAATGGTGAAAAATgc > 1:3899972/1‑68 (MQ=255) | CCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > CP009273/3618961‑3619095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |