New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 108768 =268 (0.740)14 (0.040) 5/100 NT 5.7% coding (319/744 nt) zapD FtsZ stabilizer
?CP009273 108799 = 226 (0.700)coding (288/744 nt) zapD FtsZ stabilizer

Only 100 of 359 total aligned reads displayed.

AATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGA  >  CP009273/108733‑108866
                                                                  |                                                                   
aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCtt                                                                    >  1:26318109/1‑68 (MQ=255)
aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCtt                                                                    >  1:24958644/1‑68 (MQ=255)
     aaCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTa                                                                 >  1:17249836/1‑66 (MQ=255)
      aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              <  1:29674423/68‑1 (MQ=255)
      aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              <  1:18412388/68‑1 (MQ=255)
      aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              <  1:18534317/68‑1 (MQ=255)
      aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              <  1:20650497/68‑1 (MQ=255)
       cGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:3454312/1‑67 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAActgc                                                            <  1:13218162/68‑1 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:21552599/1‑66 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:23587512/1‑66 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:27276817/1‑66 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:4720854/1‑66 (MQ=255)
         aTCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:27055980/1‑65 (MQ=255)
          tgaagcattaattcagcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAActgctg                                                          <  1:22551885‑M1/43‑1 (MQ=255)
           cTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGa                                                         <  1:2760549/68‑1 (MQ=255)
            ttCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGaa                                                        <  1:3834815/68‑1 (MQ=255)
            ttCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGaa                                                        <  1:15799268/68‑1 (MQ=255)
            ttCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGaa                                                        <  1:14338023/68‑1 (MQ=255)
             agcattaattcagcagttaaaaGCGGCGCGGTAATTAATACGCTCCCCGCCGCTTTtaactgctgtat                                                       <  1:27012135‑M1/46‑4 (MQ=255)
             agcattaattcagcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAAt                                                       <  1:5268708‑M1/46‑1 (MQ=255)
             agcattaattcagcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCGGTTTACTGCTGAAt                                                       <  1:21151992‑M1/46‑1 (MQ=255)
                cGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTaa                                                    >  1:5889406/1‑68 (MQ=255)
                    attcagcagttaaaagcggcggggagcgtattaatttccgcgccgcTTTTAACTGCTGAATTAATGCt                                                <  1:6700054‑M2/22‑1 (MQ=255)
                    attcagcagttaaaagcggcggggagcgtattaatttccgcgccgcTTTTAACTGCTGAATTAATGCt                                                <  1:19547606‑M2/22‑1 (MQ=255)
                    attcagcagttaaaagcggcggggagcgtattaatttccgcgccgcTTTTAACTGCTGAATTAATGCt                                                <  1:19662552‑M2/22‑1 (MQ=255)
                     ttcagcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:10978733‑M1/53‑1 (MQ=255)
                      aactGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:20415258/63‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:9148206/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:7914437/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:28137214/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:22608252/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:14966630/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:15272386/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:29728115/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:10772418/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:16487809/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:19240406/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:4597504/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:25457081/66‑1 (MQ=255)
                       aTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCa                                             >  1:7345221/1‑68 (MQ=255)
                         tGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt                                           <  1:21026423/68‑1 (MQ=255)
                         tGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt                                           <  1:2476038/68‑1 (MQ=255)
                         tGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt                                           <  1:24564690/68‑1 (MQ=255)
                         tGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt                                           <  1:7690417/68‑1 (MQ=255)
                           cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGCATTAATGCTTCAATAc                                         >  1:4022434/1‑68 (MQ=255)
                           cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc                                         >  1:8810937/1‑68 (MQ=255)
                           cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc                                         >  1:21802374/1‑68 (MQ=255)
                           cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc                                         >  1:29122583/1‑68 (MQ=255)
                            ccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGa                                                         <  1:212470/51‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACg                                        >  1:6607551/1‑66 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:28705531/68‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:564526/68‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:9861916/68‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:5374076/68‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:4439972/68‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:11883733/68‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:23354688/68‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:22087967/68‑1 (MQ=255)
                                    CGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCACTACGGCTCTgg                                 <  1:26772799‑M1/67‑1 (MQ=255)
                                     GGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGt                                <  1:6837251‑M1/67‑1 (MQ=255)
                                     GGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGt                                >  1:14790948‑M1/1‑67 (MQ=255)
                                      GCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTcc                              <  1:10151851‑M1/68‑1 (MQ=255)
                                      GCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTcc                              <  1:19845302‑M1/68‑1 (MQ=255)
                                        GCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCAc                            >  1:22985441‑M1/1‑68 (MQ=255)
                                        GCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCAc                            >  1:23792025‑M1/1‑68 (MQ=255)
                                          ggAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACg                           <  1:11591303/67‑1 (MQ=255)
                                             aaTTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAg                       >  1:14234684/1‑68 (MQ=255)
                                             aaTTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAg                       >  1:18992605/1‑68 (MQ=255)
                                             aaTTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAg                       <  1:10286320/68‑1 (MQ=255)
                                               ttAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGc                     >  1:6398120/1‑68 (MQ=255)
                                                  aTACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCAc                   >  1:2992383/1‑67 (MQ=255)
                                                  aTACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACg                  <  1:2845914/68‑1 (MQ=255)
                                                  aTACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACg                  <  1:8481217/68‑1 (MQ=255)
                                                  aTACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACg                  <  1:22928596/68‑1 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATTCGGCTCTGGTCCACGCCAGGCACGcc                >  1:12444490/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCCCGcc                >  1:24296239/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:9677237/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:8038311/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:29344293/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:25219659/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:9343001/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:7191215/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:26017545/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              <  1:1404209/68‑1 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:16317278/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:17092029/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:3075095/1‑68 (MQ=255)
                                                        tCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAAt             >  1:29178469/1‑67 (MQ=255)
                                                            cgccggTTTTAACTGCTGTATTTTTTCTTCATTACGGCTCTGTTGCACGCCAGGCACGCCAATCCAgg        <  1:16829244/68‑1 (MQ=255)
                                                            cgccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAgg        <  1:9077006‑M2/62‑1 (MQ=255)
                                                            cgccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAgg        <  1:19401898‑M2/62‑1 (MQ=255)
                                                            cgacgcTTTTAACTTCTGAATTAATGCTTCAATACGTCTCTGGTCCACGCCAGGCACGCCAATCCAgg        <  1:24116103‑M2/62‑1 (MQ=255)
                                                              ccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAgg        >  1:6302520‑M2/5‑66 (MQ=255)
                                                              ccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAgg        >  1:12213418‑M2/5‑66 (MQ=255)
                                                                  ttttAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGa  <  1:18031650/68‑1 (MQ=255)
                                                                  ttttAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGa  <  1:8638531/68‑1 (MQ=255)
                                                                  ttttAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGa  <  1:11233967/68‑1 (MQ=255)
                                                                  ttttAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGa  <  1:19961693/68‑1 (MQ=255)
                                                                  ttttAACTGATGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTgg   <  1:12719506/67‑1 (MQ=255)
                                                                  |                                                                   
AATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGA  >  CP009273/108733‑108866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.