| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3832491 = | 307 (0.850) | 13 (0.040) | 5/96 | NT | 6.4% | coding (884/924 nt) | yicL | EamA family inner membrane putative transporter |
| ? | CP009273 | 3832524 = | 119 (0.390) | coding (917/924 nt) | yicL | EamA family inner membrane putative transporter | |||||
Only 100 of 275 total aligned reads displayed.
TCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTC > CP009273/3832457‑3832591 | tCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCa > 1:16949862/1‑68 (MQ=255)tCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCa > 1:21248099/1‑68 (MQ=255) cATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCAt > 1:28803162/1‑68 (MQ=255) aTCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATa > 1:19355877/1‑68 (MQ=255) aTCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATa < 1:5218559/68‑1 (MQ=255) tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa < 1:15199751/68‑1 (MQ=255) tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa < 1:28263756/68‑1 (MQ=255) tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa < 1:1377593/68‑1 (MQ=255) cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg < 1:10097630/68‑1 (MQ=255) cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg < 1:17885188/68‑1 (MQ=255) gcggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAg < 1:23664982‑M2/5‑1 (MQ=255) gcggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAg < 1:27035170‑M2/5‑1 (MQ=255) gcggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAg < 1:15331515‑M2/5‑1 (MQ=255) gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTg > 1:27469284/1‑68 (MQ=255) gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTg > 1:12822671/1‑68 (MQ=255) gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAACCGTCCGGCGCGGCATAAGTg > 1:11110027/1‑68 (MQ=255) tgattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTg < 1:8626636/67‑1 (MQ=255) gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag < 1:26281871/68‑1 (MQ=255) gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag < 1:2576956/68‑1 (MQ=255) gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag < 1:25066997/68‑1 (MQ=255) gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag < 1:22897030/68‑1 (MQ=255) gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag < 1:22830846/68‑1 (MQ=255) gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag < 1:20995535/68‑1 (MQ=255) gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTga < 1:19979762/67‑1 (MQ=255) tgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTgag < 1:21028236‑M2/9‑1 (MQ=255) ttttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgaga < 1:14255656/67‑1 (MQ=255) ttttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGaa < 1:1466993/68‑1 (MQ=255) tttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAt < 1:7061813/68‑1 (MQ=255) ttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt < 1:5435577/68‑1 (MQ=255) ttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt < 1:27702957/68‑1 (MQ=255) ttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt < 1:9591394/68‑1 (MQ=255) ctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAAtt < 1:2725544‑M2/13‑1 (MQ=255) ctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAAt < 1:10379253‑M2/12‑1 (MQ=255) atttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcc > 1:17686899/1‑68 (MQ=255) ttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccag < 1:6499331/68‑1 (MQ=255) tggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAATTAcca < 1:25971088‑M2/17‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCGAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:2390048/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccatc < 1:14004861/68‑3 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:10631685/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:755432/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:17376933/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:26891927/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:184475/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:15670430/68‑1 (MQ=255) tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:10000295/68‑1 (MQ=255) tCAATGGATTCCCGGCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc < 1:2859897/68‑1 (MQ=255) ggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAATTAccagc < 1:20472955‑M2/19‑1 (MQ=255) ggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAATTAccagc < 1:26068057‑M2/19‑1 (MQ=255) ggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAATTAccagc < 1:14969090‑M2/19‑1 (MQ=255) aTGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccag < 1:7301275/68‑1 (MQ=255) ggATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGc > 1:6736255/1‑68 (MQ=255) ctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCa < 1:12705458‑M1/58‑1 (MQ=255) aTTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGTCATAAGTGAGAATTACCCGCCAGGCa > 1:12239662/1‑67 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:1994709/68‑1 (MQ=255) ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc < 1:3751992/68‑1 (MQ=255) cccGTCGCCGCGCCAGAAAAATAAATAGTCCGGCGCGGCATAAGTGAGAATTACCCGCCAGGCACcgc > 1:16431973/1‑68 (MQ=255) cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTCCCCGCCAGGCACcgc < 1:22470108‑M1/62‑1 (MQ=255) cGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg > 1:7895165/1‑67 (MQ=255) cGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg > 1:29825625/1‑67 (MQ=255) tCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGcc > 1:27585865/1‑67 (MQ=255) GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCCGCCAGGCACCGCGCCAcc < 1:5742783‑M1/68‑1 (MQ=255) GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc < 1:17983348‑M1/68‑1 (MQ=255) GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc < 1:10285029‑M1/68‑1 (MQ=255) GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc < 1:12459008‑M1/68‑1 (MQ=255) CCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg < 1:2330917‑M1/68‑1 (MQ=255) CCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg < 1:22192853‑M1/68‑1 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg > 1:4016891‑M1/1‑67 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg > 1:407029‑M1/1‑67 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg > 1:23564063‑M1/1‑67 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt < 1:2709899‑M1/68‑1 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt < 1:9209800‑M1/68‑1 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt < 1:23355750‑M1/68‑1 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt > 1:1915693‑M1/1‑68 (MQ=255) CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt < 1:18792332‑M1/68‑1 (MQ=255) GCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGtt > 1:9016875‑M1/1‑68 (MQ=255) GCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTaa < 1:7475614‑M1/68‑1 (MQ=255) GCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTaa < 1:29311806‑M1/68‑1 (MQ=255) GCCAGAAAAATAAATCGTCCGGCGCGGCAGAAGTGAGAATTACCAGCCAGGCACAGCGCCACCGTTaa < 1:28897985‑M1/68‑1 (MQ=255) aaaaTAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTaaaaa < 1:16619740/65‑1 (MQ=255) aatCGTCCGGCGCGGCATAAGTGAGAATTAGCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg < 1:20708531/68‑1 (MQ=255) atCGTCCGGCGCGGCATAAGTGAGAATTACCGGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg > 1:11922853/1‑67 (MQ=255) atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg > 1:25257585/1‑67 (MQ=255) cGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCg < 1:13306446/68‑1 (MQ=255) gTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGc < 1:1308085/68‑1 (MQ=255) gTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGc < 1:8184304/68‑1 (MQ=255) ccGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCt < 1:3209388/67‑1 (MQ=255) ccGGCGCGGCATAAGTGAGAATCACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCt < 1:14748016/67‑1 (MQ=255) ggcgcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTa < 1:20400670‑M2/60‑1 (MQ=255) cgcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCGTTAGc > 1:28992842‑M2/7‑68 (MQ=255) gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCg > 1:29567393‑M2/6‑68 (MQ=255) gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCg > 1:21723242‑M2/6‑68 (MQ=255) gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTGTAGCg > 1:24674‑M2/6‑68 (MQ=255) gccgcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTCCCGCTTTAGc > 1:21514167‑M2/6‑67 (MQ=255) ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa < 1:1865758‑M2/64‑1 (MQ=255) ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa < 1:1545802‑M2/64‑1 (MQ=255) ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa < 1:4756279‑M2/64‑1 (MQ=255) cATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACt < 1:16083800‑M2/66‑1 (MQ=255) aTAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTc > 1:6217606/1‑68 (MQ=255) aTAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTc < 1:4280938/68‑1 (MQ=255) aTAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTc > 1:24165042/1‑68 (MQ=255) | TCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTC > CP009273/3832457‑3832591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |