New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3999963	590 (1.250)	25 (0.060)	6/98	NT	5.7%	coding (740/1830 nt)	recQ	ATP‑dependent DNA helicase
	?	CP009273	= 4000007	307 (0.740)					coding (784/1830 nt)	recQ	ATP‑dependent DNA helicase

CCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3999890‑3999963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgcTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGATAA  <  CP009273/4000007‑3999942                                                                                                                                              CCGCTCGATCAGTTGATGCTCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAG                                                                          >  1:13063991/1‑68   GCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCC                                                                        <  1:28153919/68‑1    CTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCC                                                                        >  1:12382229/1‑67      CGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCG                                                                     <  1:21587017/68‑1      CGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCG                                                                     <  1:33558519/68‑1      CGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCG                                                                     <  1:37565943/68‑1      CGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCG                                                                     <  1:18774323/68‑1                                              TCAGGCATTATCTACTGCAACAGCCGCGGTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCT                              >  1:15547328/1‑67                                                    ATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTGTACTTTCG                       >  1:25308901/1‑68                                                    ATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTATTTTC                        >  1:27065808/1‑67                                                    ATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTa                        >  1:21585172/1‑66                                                    ATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTC                        >  1:6028622/1‑67                                                    ATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTC                        >  1:35795607/1‑67                                                    ATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTC                        >  1:6856401/1‑67                                                        TCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGGGGTGGCTTCTCGTTTCGCGCG                   >  1:23732606/1‑68                                                        TCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:6956519/1‑68                                                        TCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGGCTTCGACTTTCGCGCG                   >  1:15257133/1‑68                                                         CTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:17357358/1‑67                                                         CTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:23444442/1‑67                                                           ACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:36155620/1‑65                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:35214840/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:33610423/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:22408185/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:22151883/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:19467627/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:20869365/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:19924995/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:16396796/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:9594147/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:9603836/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:13470547/1‑68                                                              GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:30999695/1‑68                                                                AACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGC           >  1:18265040/1‑68                                                                  CAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAG         >  1:14203989/1‑68                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       <  1:999095/68‑1                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:31838593/1‑68                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:5136511/1‑68                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       <  1:6284935/68‑1                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:7888798/1‑68                                                                    GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:19193882/1‑68                                                                    GCCGCGCTAATT‑CCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:9869024/68‑1                                                                     CCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      >  1:4764948/1‑68                                                                     CCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      >  1:18526650/1‑68                                                                      CGCGCTAATTCCCTTGCTTTGCAGTCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:31432628/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:35209077/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:27770237/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:35008130/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:4345532/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     >  1:4804221/1‑68                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:661625/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     >  1:7146628/1‑68                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:7774528/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:8225004/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     >  1:966503/1‑68                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:33914445/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:11956112/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:15521213/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:15811572/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:2059301/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:21288706/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:23629304/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:24393387/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:25064622/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:26450867/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:26803187/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     >  1:3386247/1‑68                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:2924696/68‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     >  1:28352200/1‑68                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:10786625/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:34561015/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:35178346/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:33435002/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:2310768/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:24543807/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:26102187/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:5650683/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:5305609/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:27137674/67‑1                                                                      CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGGGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:23249439/68‑1                                                                      CGCGCTAATTCCCTTGCTCTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:37872540/67‑1                                                                         GCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTTGATAA  >  1:33584799/1‑68                                                                         GCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGATAA  >  1:15383307/1‑68                                                                         GCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGATAA  >  1:13045459/1‑68                                                                                                                                              CCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3999890‑3999963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgcTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGATAA  <  CP009273/4000007‑3999942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.