New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3999963590 (1.250)25 (0.060) 6/98 NT 5.7% coding (740/1830 nt) recQ ATP‑dependent DNA helicase
?CP009273 = 4000007 307 (0.740)coding (784/1830 nt) recQ ATP‑dependent DNA helicase

Only 100 of 540 total aligned reads displayed.

CATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCAGC  >  CP009273/3999940‑4000073
                                                                   |                                                                  
cATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                    >  1:18192810/1‑68 (MQ=255)
cATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                    >  1:26653165/1‑68 (MQ=255)
 aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                    >  1:24460124/1‑67 (MQ=255)
 aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                    >  1:34514343/1‑67 (MQ=255)
  ttATCAACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgc                                                                  >  1:33584799‑M2/1‑66 (MQ=255)
     tCTACTGCAACAGCCGCGCGAAAGTAGAAGACCCCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                               <  1:23249439‑M2/68‑6 (MQ=255)
     tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                               >  1:966503‑M2/1‑63 (MQ=255)
     tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                               <  1:15521213‑M2/68‑6 (MQ=255)
     tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                               <  1:27770237‑M2/68‑6 (MQ=255)
     tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                               <  1:35209077‑M2/68‑6 (MQ=255)
     tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                               <  1:11956112‑M2/68‑6 (MQ=255)
     tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                               >  1:7146628‑M2/1‑63 (MQ=255)
      cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcgg                                                              >  1:4764948‑M2/1‑62 (MQ=255)
      cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcgg                                                              >  1:18526650‑M2/1‑62 (MQ=255)
      cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                               <  1:26102187‑M2/67‑6 (MQ=255)
       tACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggc                                                             >  1:5136511‑M2/1‑61 (MQ=255)
       tACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggc                                                             >  1:7888798‑M2/1‑61 (MQ=255)
        aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCATGGGAATTAGAgcggcg                                                            >  1:19639522/1‑68 (MQ=255)
        aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                                                            >  1:34014774/1‑68 (MQ=255)
        aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                                                            >  1:28067882/1‑68 (MQ=255)
        aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                                                            >  1:20651084/1‑68 (MQ=255)
         cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                                                            >  1:10671874/1‑67 (MQ=255)
         cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                           <  1:28411185/68‑1 (MQ=255)
         cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                           <  1:9122708/68‑1 (MQ=255)
         cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                           <  1:19924912/68‑1 (MQ=255)
         cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                           <  1:4310454/68‑1 (MQ=255)
          tGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                           >  1:16510427/1‑67 (MQ=255)
          tGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCggcggc                                                          <  1:3331462/68‑1 (MQ=255)
           gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                           >  1:14997485/1‑66 (MQ=255)
           gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                           >  1:11529720/1‑66 (MQ=255)
           gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                           >  1:13941570/1‑66 (MQ=255)
           gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGcc                                                         >  1:20400231/1‑68 (MQ=255)
            cAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt                                                        >  1:34186170/1‑68 (MQ=255)
             aaCAGCCGCGCTAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGACTTAGCGCGGCGGCCt                                                        <  1:8540169/67‑1 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt                                                        <  1:177329/67‑1 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt                                                        <  1:16714556/67‑1 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt                                                        <  1:12853421/67‑1 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt                                                        <  1:21313614/67‑1 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt                                                        <  1:19131033/67‑1 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt                                                        <  1:18306610/67‑1 (MQ=255)
              aCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTAt                                                      <  1:34833643/68‑1 (MQ=255)
              aCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTAt                                                      <  1:26411046/68‑1 (MQ=255)
                aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa                                                    >  1:13684643/1‑68 (MQ=255)
                aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa                                                    >  1:10143117/1‑68 (MQ=255)
                aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa                                                    >  1:22541075/1‑68 (MQ=255)
                aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa                                                    >  1:22210842/1‑68 (MQ=255)
                 gCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt                                                   >  1:30501306/1‑68 (MQ=255)
                 gCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt                                                   >  1:38946244/1‑68 (MQ=255)
                  ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt                                                   >  1:11281510/1‑67 (MQ=255)
                  ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt                                                   >  1:8215737/1‑67 (MQ=255)
                  ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt                                                   >  1:531595/1‑67 (MQ=255)
                  ccGCGCGAAAGTAGAAGACACCGCT‑‑GAGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGcc                                                >  1:30231372/1‑68 (MQ=255)
                   cgcgcgAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgcagt                                                    >  1:36155620‑M2/1‑49 (MQ=255)
                   cgcgcgAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATg                                                  >  1:38396807/1‑67 (MQ=255)
                        gAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgcagtagataat                                             >  1:6028622‑M2/1‑44 (MQ=255)
                        gAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgcagtagataat                                             >  1:6856401‑M2/1‑44 (MQ=255)
                        gAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGc                                            <  1:29078455/68‑1 (MQ=255)
                           aGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTgg                                         <  1:25086073/68‑1 (MQ=255)
                           aGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTgg                                         <  1:38183902/68‑1 (MQ=255)
                            gTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGa                                        >  1:15229435/1‑68 (MQ=255)
                              agaagaCACCGCTGCGCGCCTGCAAAGCAAGTGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGaa                                       <  1:31273963/67‑1 (MQ=255)
                              agaagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGaaa                                      <  1:27015602/68‑1 (MQ=255)
                              agaagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGaa                                       <  1:27175682/67‑1 (MQ=255)
                                aagaCACCGCTGCGCGCCTGCCAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaat                                    >  1:3214929/1‑68 (MQ=255)
                                 agaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaata                                   >  1:5523199/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                 >  1:12221381/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                 >  1:18705097/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                 >  1:17381933/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                 >  1:14640921/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                 >  1:24703834/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                 >  1:26889931/1‑68 (MQ=255)
                                     acCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGt                               >  1:29411761/1‑68 (MQ=255)
                                     acCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGt                               >  1:27472929/1‑68 (MQ=255)
                                     acCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGt                               >  1:15697102/1‑68 (MQ=255)
                                      ccGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGt                               >  1:6599761/1‑67 (MQ=255)
                                      ccGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGt                               >  1:22015585/1‑67 (MQ=255)
                                      ccGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGt                               >  1:955832/1‑67 (MQ=255)
                                      ccGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGt                               >  1:37364300/1‑67 (MQ=255)
                                          tGCGCGCCTGCAAAGCAAGTGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATATTGTTggc                           <  1:30911911/67‑1 (MQ=255)
                                          tGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTcgc                           >  1:16947466/1‑67 (MQ=255)
                                          tGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTcgc                           <  1:582931/67‑1 (MQ=255)
                                          tGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTcgc                           >  1:12983016/1‑67 (MQ=255)
                                          tGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTcgc                           >  1:35742674/1‑67 (MQ=255)
                                             gcgcCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCg                       >  1:21827045/1‑68 (MQ=255)
                                                ccTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtg                    >  1:23718283/1‑68 (MQ=255)
                                                 cTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtgt                   <  1:25620470/68‑1 (MQ=255)
                                                 cTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtgt                   <  1:22865830/68‑1 (MQ=255)
                                                   gCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGc                 <  1:25389158/68‑1 (MQ=255)
                                                     aaaGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAg               >  1:36617705/1‑68 (MQ=255)
                                                       aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAGTAATGTTCGCGCCGATGTGCAGGa             >  1:37481847/1‑68 (MQ=255)
                                                       aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa             >  1:14276913/1‑68 (MQ=255)
                                                       aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa             >  1:24138691/1‑68 (MQ=255)
                                                       aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa             >  1:37739934/1‑68 (MQ=255)
                                                              gAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAAtt       <  1:20843221/67‑1 (MQ=255)
                                                               aaTTAGCGCGGCGGCCTATCATGCCGGGGTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTcc     >  1:37021003/1‑68 (MQ=255)
                                                               aaTTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTcc     >  1:21451000/1‑68 (MQ=255)
                                                                aTTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCa    >  1:73872/1‑68 (MQ=255)
                                                                  tAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCAgc  <  1:31734144/68‑1 (MQ=255)
                                                                  tAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCAgc  <  1:29992607/68‑1 (MQ=255)
                                                                   aGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCAgc  >  1:32779097/1‑67 (MQ=255)
                                                                   |                                                                  
CATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCAGC  >  CP009273/3999940‑4000073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.