| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3999963 | 590 (1.250) | 25 (0.060) | 6/98 | NT | 5.7% | coding (740/1830 nt) | recQ | ATP‑dependent DNA helicase |
| ? | CP009273 | = 4000007 | 307 (0.740) | coding (784/1830 nt) | recQ | ATP‑dependent DNA helicase | |||||
Only 100 of 787 total aligned reads displayed.
ATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGG > CP009273/3999897‑4000029 | aTCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCcgcgcg > 1:36151982/1‑68 (MQ=255) aGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGaaa > 1:14133511/1‑68 (MQ=255) tGATGCGCTACGTTCAGTAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGt < 1:37101005/67‑1 (MQ=255) tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGaaa < 1:26928875/65‑1 (MQ=255) tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGaaa < 1:44716/65‑1 (MQ=255) tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGaaa < 1:31251558/65‑1 (MQ=255) tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGaaa < 1:17369137/65‑1 (MQ=255) tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGaaa < 1:36722392/65‑1 (MQ=255) tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGt < 1:1347081/67‑1 (MQ=255) tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGt < 1:12146959/67‑1 (MQ=255) tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGt < 1:25605722/67‑1 (MQ=255) tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGt < 1:17837984/67‑1 (MQ=255) tGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGAATTATCTACTGCAACAGCCGCGCGaaa < 1:6758685/65‑1 (MQ=255) gATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTag > 1:38757329/1‑68 (MQ=255) gATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTag > 1:18588647/1‑68 (MQ=255) gATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTac > 1:1609620/1‑67 (MQ=255) tGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaa > 1:34455133/1‑68 (MQ=255) cgcTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaag > 1:337277/1‑67 (MQ=255) cgcTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaag > 1:30864298/1‑67 (MQ=255) cgcTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTagaag > 1:1518036/1‑67 (MQ=255) tACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGaca < 1:9071608/67‑1 (MQ=255) gTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACAcc > 1:28128120/1‑66 (MQ=255) gCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCt > 1:7493215/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAATAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:16839009/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:24736262/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:32464581/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg < 1:3059518/67‑1 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg < 1:2595382/67‑1 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:2772107/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:31529624/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:7888413/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:3827132/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:8144811/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:15539495/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:8488452/1‑67 (MQ=255) aaCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:1176364/1‑67 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGCCACCGCTgcgcg > 1:22491765/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACCCCGCTgcgcg > 1:29107404/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:19840276/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:36398599/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:6072777/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:24493219/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:24152267/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:33224695/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:23512985/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:28540327/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:29547329/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:19058040/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTgcgcg > 1:9543823/1‑66 (MQ=255) aCAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGcc < 1:10049293/68‑1 (MQ=255) cgcgGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCa > 1:14512995/1‑68 (MQ=255) gcgGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCt < 1:13849089/64‑1 (MQ=255) gcgGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCaa > 1:32880055/1‑68 (MQ=255) ggTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCaaa < 1:21140276/67‑1 (MQ=255) aaGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCaa > 1:26285744/1‑68 (MQ=255) aaGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCaa > 1:4187450/1‑68 (MQ=255) tCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAggg > 1:1148685/1‑68 (MQ=255) cAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAgg < 1:20808206/66‑1 (MQ=255) cAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAgg < 1:33574616/66‑1 (MQ=255) cAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAgg < 1:23787124/66‑1 (MQ=255) cAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGa < 1:20003045/68‑1 (MQ=255) cAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTCCGCGCCTGCAAAGCAAGGGa > 1:6351098/1‑68 (MQ=255) cATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa > 1:18192810/1‑68 (MQ=255) cATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa > 1:26653165/1‑68 (MQ=255) aTTATCTACTGCAACAGCCGCGCtaattcccttgctttgcaggcgcgcagcggtgtcttctacttta > 1:21585172‑M1/1‑23 (MQ=255) aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa > 1:30303310/1‑67 (MQ=255) aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa > 1:22047449/1‑67 (MQ=255) aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa > 1:11280432/1‑67 (MQ=255) tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg > 1:966503‑M2/1‑63 (MQ=255) tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg > 1:28352200‑M2/1‑63 (MQ=255) cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg < 1:2310768‑M2/67‑6 (MQ=255) cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg < 1:30107315/68‑1 (MQ=255) cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg < 1:37809765/68‑1 (MQ=255) cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg < 1:16569594/68‑1 (MQ=255) tGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:13020967/1‑67 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACCCCGCTGCGCGCCTCCAAAGCAAGGGAATTAGCGCGGCGGcc > 1:22774397/1‑68 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:10305339/1‑66 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:20555687/1‑66 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:18450156/1‑66 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg > 1:21438785/1‑66 (MQ=255) gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGcc > 1:35746063/1‑68 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgc > 1:35214840‑M2/1‑55 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgc > 1:19467627‑M2/1‑55 (MQ=255) aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt < 1:5224292/67‑1 (MQ=255) cAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATc > 1:8805736/1‑68 (MQ=255) aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa > 1:22210842/1‑68 (MQ=255) aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa > 1:3466246/1‑68 (MQ=255) gCCGCGCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagta > 1:31838593‑M1/1‑7 (MQ=255) gCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt > 1:27420549/1‑68 (MQ=255) ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt > 1:5664451/1‑67 (MQ=255) ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt > 1:12434435/1‑67 (MQ=255) cgcgcgAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt < 1:34047969/66‑1 (MQ=255) cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtaga < 1:15811572‑M1/68‑64 (MQ=255) cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtaga < 1:25064622‑M1/68‑64 (MQ=255) cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtaga > 1:7146628‑M1/1‑5 (MQ=255) cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtaga > 1:4804221‑M1/1‑5 (MQ=255) cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtaga < 1:33914445‑M1/68‑64 (MQ=255) cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtaga < 1:35008130‑M1/68‑64 (MQ=255) cgcgCtaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtag < 1:10786625‑M1/67‑63 (MQ=255) gctaattcccttgctttgcaggcgcgcagcggtgtcttctactttcgcgcggctgttgcagtagataa > 1:15383307‑M1/1‑2 (MQ=255) | ATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGG > CP009273/3999897‑4000029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |