| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 25731 | 102 (0.290) | 9 (0.030) | 5/84 | NT | 8.1% | noncoding (22/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 25775 | NA (NA) | noncoding (66/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 320 total aligned reads displayed.
AAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccggcctac‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/25667‑25731‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTTATTAT < CP009273/25775‑25698 AAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTT > 1:11057143/1‑68 AGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTA < 1:27775825/68‑1 AGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTT < 1:20450610/67‑1 TTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCG > 1:17145495/1‑68 TTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCG > 1:38459606/1‑68 TTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCG > 1:23187549/1‑68 TTTTGCCTTCTAGAGCGAAAAAACAATATTAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:31451569/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCTATGCTGACGCATCTTATCCGG < 1:15615153/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:33862233/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:21779278/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:15292044/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:22150373/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:4595593/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:11838571/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:5447625/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:7002885/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:103018/68‑1 TTTTGCCTTCTAGAGCGAAAAAACAACAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:4395925/68‑1 TTTTGCCTTCTAGAGCCAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG < 1:9505319/68‑1 TTTGCCTTCTAGAGCGAAAAAACAATAATAACCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGC < 1:20223037/68‑1 TTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGC < 1:18350069/68‑1 TTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGC < 1:18536915/68‑1 TTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGC < 1:37371095/68‑1 TTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGC < 1:35612884/68‑1 TTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGC < 1:12953733/68‑1 TTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGC < 1:19381110/68‑1 TTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGG > 1:14136217/1‑66 TGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCT < 1:15827580/68‑1 TGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCT < 1:13876397/68‑1 GCCTTCTAGAGCGAAAAAACAATAATAAACCGTGCCGGATGCGATGCTGACGGATCTTATCCGGCCT > 1:6776077/1‑67 GCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCT > 1:15412957/1‑67 CTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTAC < 1:105067/67‑1 AAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGG < 1:12147888/68‑1 GCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATC > 1:15775466/1‑67 GCTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATC > 1:38622396/1‑67 CTGACGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGC > 1:24560317/1‑68 CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC > 1:7582499/1‑68 CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC > 1:38016642/1‑68 CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC > 1:30085659/1‑68 CGCATCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCC > 1:7129593/1‑68 CTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAG > 1:18658598/1‑68 CTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCAGCCGGCAG > 1:4117771/1‑68 TTATCCGGCCTACGATTTCGCAGCAATCTGTCGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGG < 1:7273147/68‑1 TTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGG < 1:16623507/68‑1 TTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGG < 1:36001085/68‑1 TATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGG < 1:5746582/68‑1 TATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGG < 1:8381260/68‑1 TATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGG < 1:35774577/68‑1 TATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGG < 1:17832564/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTATGCCTGATAAGATGGGTCAGCATCGCATCCGGCAGGGT < 1:26549999/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:10072438/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:13617629/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:31283354/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:36313866/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:4898466/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:10822373/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:6142817/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:6618059/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:8904060/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:30770799/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:26693853/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:26177682/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:28850759/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:29204050/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:25255597/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:23482169/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:22890518/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:20870767/68‑1 ATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:19021093/68‑1 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCTGGGTT > 1:21381098/1‑68 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTT > 1:24812858/1‑68 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTT > 1:26119520/1‑68 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTT > 1:19762670/1‑68 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTT > 1:31211463/1‑68 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTT > 1:38153432/1‑68 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTT > 1:12664544/1‑68 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTT > 1:32527492/1‑68 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTT > 1:27428358/1‑68 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTT > 1:30288841/1‑68 TCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTT > 1:34634409/1‑68 CCGGCCTAGGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTT < 1:34943215/68‑1 CCGGCCTACGATTTCGCAGCAATCTGTCGGCCGGATAAGATGCGTCCGCATCGCCTCCGGCAGGGTTT > 1:34453509/1‑68 CCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTT > 1:18868343/1‑68 CCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTT > 1:31555963/1‑68 CCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTT < 1:21628660/68‑1 CCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTT > 1:14742914/1‑68 CCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTT > 1:34894428/1‑68 CCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTT > 1:12508382/1‑68 CCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTT > 1:35134373/1‑68 CCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTT < 1:26880412/68‑1 CGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTTA > 1:25627644/1‑68 CGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTTA > 1:32085786/1‑68 CGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTTA < 1:9090960/68‑1 GCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTTATT > 1:22528970/1‑68 GCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGT < 1:60481/63‑1 GCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATACGGCAGGGTTTATT > 1:9045437/1‑68 CCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTTATTA > 1:24323400/1‑68 CCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTTATTA > 1:28319960/1‑68 CCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTTATTA > 1:36827111/1‑68 CCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTTATTA > 1:37846905/1‑68 AAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccggcctac‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/25667‑25731‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCAGGGTTTATTAT < CP009273/25775‑25698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |