| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 25731 | 102 (0.290) | 9 (0.030) | 5/84 | NT | 8.1% | noncoding (22/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 25775 | NA (NA) | noncoding (66/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 498 total aligned reads displayed.
TGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAA > CP009273/25664‑25798 | tGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCAt < 1:9719618/68‑1 (MQ=255)tGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCAt < 1:35219246/68‑1 (MQ=255)tGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCAt < 1:13613591/68‑1 (MQ=255) aaGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATctt > 1:9081325‑M1/1‑65 (MQ=255) aGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATctta < 1:7091137‑M1/68‑5 (MQ=255) aGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATctta < 1:27775825‑M1/68‑5 (MQ=255) aGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATctt < 1:20450610‑M1/67‑4 (MQ=255) tttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccg > 1:25858292‑M1/1‑60 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCTATGCTGACGCATcttatccgg < 1:10163304‑M1/68‑10 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccgg < 1:29513136‑M1/68‑10 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccgg < 1:21773631‑M1/68‑10 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccgg < 1:31337528‑M1/68‑10 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccgg < 1:38212541‑M1/68‑10 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccgg < 1:599238‑M1/68‑10 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccgg < 1:24605321‑M1/68‑10 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccgg < 1:34807754‑M1/68‑10 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccgg < 1:11188342‑M1/68‑10 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccag < 1:5561775‑M1/68‑10 (MQ=255) ttttGCCTTCTAGAGCGAAAAAACAACAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccgg < 1:4395925‑M1/68‑10 (MQ=255) tttGCCTTCTAGAGCGAAAAAACAATAATAACCCCTGCCGGATGCGATGCTGACGCATcttatccggc < 1:20223037‑M1/68‑11 (MQ=255) tttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccggc < 1:35948893‑M1/68‑11 (MQ=255) tttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccggc < 1:18536915‑M1/68‑11 (MQ=255) tttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccggc < 1:15176773‑M1/68‑11 (MQ=255) gCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccggcct > 1:14309453‑M1/1‑55 (MQ=255) cTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATcttatccggcctac < 1:105067‑M1/67‑15 (MQ=255) tAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGAtt < 1:1648522/68‑1 (MQ=255) tAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGAtt < 1:6365664/68‑1 (MQ=255) agagCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGAtt > 1:1684533/1‑67 (MQ=255) agagCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGAtt > 1:34346618/1‑67 (MQ=255) agagCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGAtt > 1:4948005/1‑67 (MQ=255) agCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGAtt > 1:33236133/1‑65 (MQ=255) gCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATtgc < 1:21382589/66‑1 (MQ=255) aaaaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGaa < 1:5347638/68‑1 (MQ=255) aaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAAt < 1:1292436/68‑1 (MQ=255) aaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAAt < 1:7614983/68‑1 (MQ=255) aaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAAt < 1:15892921/68‑1 (MQ=255) aaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATc > 1:22972678/1‑68 (MQ=255) taataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGG > 1:11928460‑M2/1‑68 (MQ=255) taataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGG > 1:28319960‑M2/1‑68 (MQ=255) taataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGG > 1:24323400‑M2/1‑68 (MQ=255) taataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGG > 1:38051‑M2/1‑68 (MQ=255) ataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCC < 1:792762‑M2/68‑1 (MQ=255) taaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCG > 1:6663947‑M2/1‑68 (MQ=255) acaccCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG > 1:32747595‑M2/3‑68 (MQ=255) aaaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG > 1:1718684‑M2/1‑68 (MQ=255) aaaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:26880412‑M2/68‑1 (MQ=255) aaaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG > 1:31555963‑M2/1‑68 (MQ=255) aaaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGG < 1:12376585‑M2/68‑1 (MQ=255) aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA > 1:30288841‑M2/1‑68 (MQ=255) aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA > 1:3957681‑M2/1‑68 (MQ=255) aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA > 1:13121369‑M2/1‑68 (MQ=255) aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA > 1:31211463‑M2/1‑68 (MQ=255) aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA > 1:10972890‑M2/1‑68 (MQ=255) aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA > 1:6825729‑M2/1‑68 (MQ=255) aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA > 1:18793639‑M2/1‑68 (MQ=255) aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA > 1:21852044‑M2/1‑68 (MQ=255) aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA > 1:27428358‑M2/1‑68 (MQ=255) aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGA < 1:23194284‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:10072438‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:8904060‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:19021093‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:19404900‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:4776319‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:23603878‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:36313866‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:26177682‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:26587848‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:28850759‑M2/68‑1 (MQ=255) aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAT < 1:3240529‑M2/68‑1 (MQ=255) ccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA < 1:35642009‑M2/68‑1 (MQ=255) ccTGCCGGATGCGATGCTGACGCATCTTATCCCGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAA < 1:13895703‑M2/68‑1 (MQ=255) cTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAG > 1:37551160‑M2/1‑68 (MQ=255) tGCCGGATGCGTTGCTGTCGCATCTTATCCGTCCTACAGATTGCTGCGAACTCGTAGGCCGGATAAgg < 1:21050489/68‑1 (MQ=21) tGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAgg < 1:25525741/68‑1 (MQ=255) tGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAgg < 1:719179/68‑1 (MQ=255) gCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGc < 1:35076952/68‑1 (MQ=255) cGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatg > 1:15557109‑M2/1‑64 (MQ=255) cGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt > 1:22587970/1‑68 (MQ=255) cGGATGCGATGCTGACGCATCTTATACGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt > 1:29919949/1‑68 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:18151511‑M2/1‑63 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:9400305‑M2/1‑63 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:30788806‑M2/1‑63 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:28926968‑M2/1‑63 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:36615734‑M2/1‑63 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:37208432‑M2/1‑63 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:37909403‑M2/1‑63 (MQ=255) tgcgatgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAc < 1:22221902/68‑1 (MQ=255) gcTGACGCATcttatccggcctacgatttcgcagcaatctgtaggccggataagatgcgtcagcatc > 1:15775466‑M1/1‑10 (MQ=255) gcTGACGCATcttatccggcctacgatttcgcagcaatctgtaggccggataagatgcgtcagcatc > 1:38622396‑M1/1‑10 (MQ=255) gcTGACGCATcttatccggcctacgatttcgcagcaatcggtaggccggataagatgcgtcagcatc > 1:31898711‑M1/1‑10 (MQ=255) tGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCAt < 1:12571776/67‑1 (MQ=255) cGCATcttatccggcctacgatttcgcagcaatctgtaggccggataagatgcgtcagcatcgcatcc > 1:7482548‑M1/1‑5 (MQ=255) cGCATcttatccggcctacgatttcgcagcaatctgtaggccggataagatgcgtcagcatcgcatcc > 1:34503671‑M1/1‑5 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg > 1:11273285/1‑67 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg > 1:33749427/1‑67 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 1:24953854/67‑1 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg > 1:15397459/1‑67 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 1:8409081/67‑1 (MQ=255) cATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa > 1:61295/1‑68 (MQ=255) aTCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAGAAGGCGTTTACGCCGCATCCGGCaa > 1:27159614/1‑68 (MQ=255) | TGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAA > CP009273/25664‑25798 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |