| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 25731 | 102 (0.290) | 9 (0.030) | 5/84 | NT | 8.1% | noncoding (22/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 25775 | NA (NA) | noncoding (66/86 nt) | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 748 total aligned reads displayed.
CTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTAC > CP009273/25708‑25841 | cTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAG > 1:18658598‑M2/1‑68 (MQ=255) cGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCg < 1:11222181/67‑1 (MQ=255) cGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt > 1:5851469/1‑68 (MQ=255) cGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt > 1:15450413/1‑68 (MQ=255) cGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt > 1:32797952/1‑68 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:38016642‑M2/1‑63 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:18151511‑M2/1‑63 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:30085659‑M2/1‑63 (MQ=255) ggATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGatgcg > 1:28926968‑M2/1‑63 (MQ=255) gcgatgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcg < 1:22541832/68‑1 (MQ=255) atgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgcc > 1:27962439/1‑67 (MQ=255) tgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgccgc < 1:33516607/68‑1 (MQ=255) gcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:4041838/1‑68 (MQ=255) tGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCAt < 1:12571776/67‑1 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg > 1:33614809/1‑67 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 1:24953854/67‑1 (MQ=255) cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAGAAGGCGTTTACGCCGCATCCg > 1:3868159/1‑67 (MQ=255) cTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaaa > 1:22688332/1‑68 (MQ=255) tATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAAt > 1:23889828/1‑68 (MQ=255) tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAGAt > 1:7228583/1‑66 (MQ=255) tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAAt > 1:19191336/1‑66 (MQ=255) tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAAt > 1:17131736/1‑66 (MQ=255) tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAAt > 1:11928513/1‑66 (MQ=255) tCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAGAAGGCGTTTACGCCGCATCCGGCAAAAAt > 1:6879542/1‑66 (MQ=255) tCCGGCCTACAGATTGCGGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATcc < 1:17899481/68‑1 (MQ=255) ccGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCt > 1:1598512/1‑68 (MQ=255) ccGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCt > 1:29483604/1‑68 (MQ=255) ccGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCt > 1:8187548/1‑68 (MQ=255) cGGCCTACAGATTGCTGCGCAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAATCCtt > 1:7562434/1‑68 (MQ=255) ccTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTaa < 1:36920816/67‑1 (MQ=255) ccTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTaa < 1:26984249/67‑1 (MQ=255) ccTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTaa < 1:11361921/67‑1 (MQ=255) ccTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTaa < 1:8412451/67‑1 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:24111726/68‑1 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:33231162/68‑1 (MQ=255) cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat < 1:25369047/68‑1 (MQ=255) tACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAata < 1:34300189/68‑1 (MQ=255) tACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAata < 1:23400752/68‑1 (MQ=255) tACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAata < 1:27147708/68‑1 (MQ=255) aGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATaa > 1:24456678/1‑68 (MQ=255) ttGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga < 1:20602588/67‑1 (MQ=255) ttGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga < 1:20032628/67‑1 (MQ=255) ttGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga < 1:37267982/67‑1 (MQ=255) ttGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga > 1:26212693/1‑67 (MQ=255) tgcGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCaaa < 1:19807053/68‑1 (MQ=255) aTCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCa > 1:9532211/1‑68 (MQ=255) aTCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCa > 1:15040955/1‑68 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt < 1:37779092/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt < 1:35304987/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt < 1:38960543/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt < 1:28358454/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt < 1:10058051/68‑1 (MQ=255) gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt < 1:24647084/68‑1 (MQ=255) tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATg > 1:30348771/1‑66 (MQ=255) gCCGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaa < 1:35612884‑M2/68‑59 (MQ=255) gCCGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaa < 1:35948893‑M2/68‑59 (MQ=255) gCCGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaa < 1:1383734‑M2/68‑59 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGa > 1:18881606/1‑68 (MQ=255) ccGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaa < 1:36279888‑M2/68‑60 (MQ=255) ccGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaa < 1:33862233‑M2/68‑60 (MQ=255) ccGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaa < 1:6625836‑M2/68‑60 (MQ=255) ccGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaa < 1:4595593‑M2/68‑60 (MQ=255) ccGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaa < 1:38212541‑M2/68‑60 (MQ=255) ccGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaa < 1:31337528‑M2/68‑60 (MQ=255) ccGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaa < 1:15666507‑M2/68‑60 (MQ=255) ccGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaa < 1:22150373‑M2/68‑60 (MQ=255) ccGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaa < 1:29874433‑M2/68‑60 (MQ=255) ccGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa > 1:2864428/1‑68 (MQ=255) cGGATTAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:32245925/67‑1 (MQ=255) cGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaaa > 1:38459606‑M2/1‑8 (MQ=255) cGGATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaaa > 1:25858292‑M2/1‑8 (MQ=255) cGGATAAGGCGTTTACGCCGGATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:27419463/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:10398937/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:6208340/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:14576654/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:3506533/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:4277099/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:16393156/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:13448273/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:10686587/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:2558295/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:26612910/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:31067166/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:36525033/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:31801368/67‑1 (MQ=255) cGGATAAGGCGTTTACGCCGCATCCGGAAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:1280779/67‑1 (MQ=255) aggATAAGGAGTTTAAGCCGAATCCGGGAAAAATGCTTAAATATAAGAGCAAACCTGCATGTCTGaa < 1:550715/66‑1 (MQ=255) ggATAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaaa < 1:23123222‑M2/67‑61 (MQ=255) ggATAAGGCGTTTACGCCTCATCCGGCAAAAATCCTTATATATAAGAGCAAACCTGCATGTCTGAATc < 1:20960352/68‑1 (MQ=37) ggATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATc < 1:17470880/68‑1 (MQ=255) tAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaaaacct < 1:7091137‑M2/68‑65 (MQ=255) tAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaaaacct < 1:14779377‑M2/68‑65 (MQ=255) tAAGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaaaacct < 1:16821363‑M2/68‑65 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGt < 1:15328195/68‑1 (MQ=255) tAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGt < 1:3453971/68‑1 (MQ=255) aaGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaaaacctt > 1:14156963‑M2/1‑3 (MQ=255) aaGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaaaacctt > 1:11057143‑M2/1‑3 (MQ=255) aaGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaaaacctt > 1:21686545‑M2/1‑3 (MQ=255) aaGatgcgtcagcatcgcatccggcagggtttattattgttttttcgctctagaaggcaaaaaacctt > 1:9081325‑M2/1‑3 (MQ=255) aaGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGt > 1:5081842/1‑67 (MQ=255) | CTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTAC > CP009273/25708‑25841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |