| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4047497 | 326 (0.690) | 43 (0.110) | 14/94 | NT | 13.4% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 283 (0.710) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
Only 100 of 160 total aligned reads displayed.
AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4047422‑4047497‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcaGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAA < CP009273/4047517‑4047451 AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:32818296/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:640383/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:7012092/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:16038146/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:12284276/1‑68AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC < 1:36395324/68‑1AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTC > 1:36247934/1‑68 AAGCGTCGCCCGGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCCACCGTTGATTCAAACAGTTCG > 1:2778385/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:29127257/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:25178305/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:24624642/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:20755020/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:17750697/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:17153636/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:5628460/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:29842778/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:30749176/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:9807412/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:1387812/1‑67 AAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCG > 1:13850856/1‑67 AAGCCTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATACAAACAGTTCG > 1:8538739/1‑67 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:10620319/1‑68 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:27752588/1‑68 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:10059977/1‑68 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:36988361/1‑68 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:17053658/1‑68 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:34511608/1‑68 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:35724332/1‑68 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCC > 1:1124216/1‑68 AGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGC < 1:37761456/67‑1 CGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGG > 1:1476643/1‑68 CGTCGCCCAGCTGTCCGGTTGCATTTGCCAAGTACTCTCCGCAACCGTGGCTTCACACAGTTCGCCGG > 1:29233821/1‑68 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCGGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:23636617/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:15528363/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:36667097/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:35469709/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:2529141/68‑1 GTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:2575127/68‑1 GTCGCCCAGCTGTCCGGTGGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGG < 1:7578649/68‑1 CGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCA > 1:11873459/1‑68 CGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCA > 1:20502095/1‑68 TGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGT < 1:9393797/66‑1 CGAAGTACTCTCCGCAACCGTTGATTGAAACAGTTCGGCGGGCAGGGAGTGTTGATTGAGGGTTTGg > 1:34840123/1‑66 CGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCTGGATGGGTTGATTCAGGATTTGC > 1:25873231/1‑67 CGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGC > 1:23153581/1‑67 CGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGC > 1:24240341/1‑67 GAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCC > 1:5289097/1‑68 AGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGGTTCAGGATTTGCGCG > 1:38528093/1‑67 AGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCG > 1:4515005/1‑67 AGTACTCTCCGCAACCGTTGATTAAAACAGTTCGCCGGGCAGGTAGTGTTGATTGAGGATTTGCCCGG > 1:11301946/1‑68 ACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGGTTTGCCCGGCGA > 1:28079187/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGT > 1:30890256/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGT > 1:32653641/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGT > 1:29496415/1‑68 CCGCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGGTGATTCAGGATTTGCCCGGCGAACTGT > 1:16144578/1‑68 GCAACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTT > 1:18173928/1‑68 ACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGCTTTGCCCGGGGGACGGTTTGAA > 1:9701484/1‑68 ACCGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAA > 1:22694625/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:3090657/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:38500315/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:19235398/1‑68 CGTTGATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATC > 1:16405982/1‑68 ATTCAAACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGG > 1:19367193/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:24249637/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:13099743/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:8494788/1‑68 ACAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTAGCCCGGCGAACTGTTTGAATCAACGGTTGCGG > 1:33467339/1‑68 CAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGA > 1:21052371/1‑68 CAGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGA > 1:20164087/1‑68 AGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAG > 1:25739741/1‑68 AGTTCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAG > 1:16596239/1‑68 TCGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT > 1:21379197/1‑68 CGCCGGGCAGGAAGTGTTTATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:4008553/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:3594724/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:25267119/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:32089882/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:10291504/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:12193066/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:14959545/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:17231041/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:17715299/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:19652585/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:32250277/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:30852668/67‑1 CGCCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGT < 1:26790473/67‑1 CCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGATCTGTTTGATTCAACGGTTGCGGAGAGTACT > 1:18879410/1‑68 CCGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT > 1:10957250/1‑68 CGGGCAGGAAGTGTTGCGTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT < 1:31375179/67‑1 CGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT > 1:16682770/1‑67 CGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT < 1:15080635/67‑1 CGGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACT < 1:22320992/67‑1 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC > 1:15356377/1‑68 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC > 1:4363446/1‑68 GGGCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTC > 1:14450941/1‑68 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGC > 1:18800902/1‑68 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGC > 1:14640264/1‑68 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGC > 1:25962941/1‑68 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGC > 1:22821928/1‑68 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCG < 1:30450475/67‑1 GCAGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCG < 1:24518869/67‑1 AGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4047422‑4047497‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcaGGAAGTGTTGATTCAGGATTTGCCCGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAA < CP009273/4047517‑4047451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |