New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4047497326 (0.690)43 (0.110) 14/94 NT 13.4% coding (1142/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein
?CP009273 = 4047517 283 (0.710)coding (1122/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein

Only 100 of 497 total aligned reads displayed.

TTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047450‑4047584
                                                                   |                                                                   
   gCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc                                                                  >  1:18800902‑M2/1‑65 (MQ=255)
     tggaaaacacctgccgctggctaacggtgatggcCGCCGGGCAAATCCTGAATCAACACTTCCTGc                                                                  >  1:21831094‑M1/35‑66 (MQ=255)
       aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGACGCAACACTTCCtgcccg                                                               <  1:31375179‑M2/67‑7 (MQ=255)
       aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccgg                                                              >  1:10957250‑M2/1‑61 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcga                                                           >  1:30587246‑M2/1‑58 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:26790473‑M2/67‑10 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:25267119‑M2/67‑10 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:32089882‑M2/67‑10 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                                            <  1:3594724‑M2/67‑10 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:973679/68‑1 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:1435098/68‑1 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:8792086/68‑1 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:20197468/68‑1 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:27818083/68‑1 (MQ=255)
          aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                           <  1:18100018/68‑1 (MQ=255)
            tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         <  1:28228957/68‑1 (MQ=255)
            tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         <  1:38810310/68‑1 (MQ=255)
            gctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                                         <  1:12891609/67‑1 (MQ=255)
             ctcCGCAACCGTTGATTCAACCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                        <  1:27348601/68‑1 (MQ=255)
             ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaact                                                        >  1:112373‑M2/1‑55 (MQ=255)
              tcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCAt                                                       <  1:30194649/68‑1 (MQ=255)
               ccGCATCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:30880791/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt                                                      >  1:14837765‑M2/1‑53 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:4614174/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:34274892/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:8089401/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                      >  1:12292481/1‑68 (MQ=255)
               ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGCCCATc                                                      >  1:17782873/1‑68 (MQ=255)
                 gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCCACACTTCCTGCCCGGCGGCCATCa                                                     >  1:39077153/1‑67 (MQ=255)
                 gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCa                                                     >  1:222984/1‑67 (MQ=255)
                   acccGTTGATTCAAACAGTTCGCCGGGCAACTCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:7291400/65‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:12606000/67‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:1011220/67‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                                                   <  1:2336748/67‑1 (MQ=255)
                   aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTACCTGCCCGGCGGCCATCAcc                                                   <  1:11416421/67‑1 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCga                                                 >  1:19082063/1‑67 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:91544/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:15084661/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:9460115/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:4549789/1‑68 (MQ=255)
                    aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                                                 >  1:26114082/1‑68 (MQ=255)
                          gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg                                           >  1:38500315‑M2/1‑42 (MQ=255)
                            ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggt                                         >  1:22694625‑M2/1‑40 (MQ=255)
                            ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAg                                          <  1:13474759/67‑1 (MQ=255)
                            ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAg                                          <  1:37182689/67‑1 (MQ=255)
                            ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc                                         >  1:32718783/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCTTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:2899755/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGctg                                    >  1:538831/1‑66 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:29269148/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:34852198/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:59851/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:10226556/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:16448461/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:26588804/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:24427818/1‑68 (MQ=255)
                                 aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                                    >  1:23871481/1‑68 (MQ=255)
                                   aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  >  1:29664346/1‑68 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  <  1:26262097/65‑1 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  <  1:20975649/65‑1 (MQ=255)
                                      tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                  <  1:22957557/65‑1 (MQ=255)
                                       CGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGttt                              >  1:35519996‑M1/1‑68 (MQ=255)
                                       CGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGttt                              >  1:13812107‑M1/1‑68 (MQ=255)
                                             gCAAATCCTGAATCAACCCATCCagcccggcgaactgtttgaatcaacggttgcggagagtacttcg                         >  1:25873231‑M2/1‑23 (MQ=255)
                                             gCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcggagagtacttcg                         >  1:24240341‑M2/1‑23 (MQ=255)
                                              CAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGc                        >  1:21199588‑M1/1‑67 (MQ=255)
                                                aaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTgg                     <  1:32457378/68‑1 (MQ=255)
                                                  tCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGgc                    >  1:17644660/1‑67 (MQ=255)
                                                  tCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGgc                    >  1:16078839/1‑67 (MQ=255)
                                                   ccTGAATCAACACTTCCTGCCCGGCGGCCATCCCCGTTAGCCAGCGGCTGGTGTTTTCCAGCTCgcgc                  >  1:6675161/1‑68 (MQ=255)
                                                   ccTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGgcgc                  >  1:22407289/1‑68 (MQ=255)
                                                    cTGACTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGgcgct                 <  1:32897092/68‑2 (MQ=255)
                                                    cTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:29847252/68‑1 (MQ=255)
                                                    cTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCa                 <  1:34734334/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:4945777/1‑68 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:11924485/1‑68 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:17106733/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:4346966/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:10507774/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:38221859/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             <  1:37461844/68‑1 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGtt             >  1:19671246/1‑68 (MQ=255)
                                                        aTCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGGTTTCCAGCTGGCGCACGtt             <  1:33121870/68‑1 (MQ=255)
                                                         tccacacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTCTTTTCCAGCTGGCGCACGTTg            <  1:8499226/65‑1 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:19221680/68‑1 (MQ=255)
                                                         tCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTg            <  1:17262615/68‑1 (MQ=255)
                                                             cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:15311340/1‑68 (MQ=255)
                                                             cacTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:15753911/1‑68 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg       <  1:36730508/68‑1 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTgg       <  1:33443635/68‑1 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:2564505/1‑67 (MQ=255)
                                                              acTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTg        >  1:6345982/1‑67 (MQ=255)
                                                                 tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc     >  1:31026766/1‑67 (MQ=255)
                                                                 tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc     >  1:16686600/1‑67 (MQ=255)
                                                                 tCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc     >  1:19388719/1‑67 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   >  1:28012410/1‑67 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc   >  1:20699526/1‑67 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:34097396/68‑1 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:21653370/68‑1 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:18569126/68‑1 (MQ=255)
                                                                   cTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACg  <  1:23042068/68‑1 (MQ=255)
                                                                   |                                                                   
TTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACG  >  CP009273/4047450‑4047584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.