New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4047497326 (0.690)43 (0.110) 14/94 NT 13.4% coding (1142/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein
?CP009273 = 4047517 283 (0.710)coding (1122/1410 nt) glnG fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein

Only 100 of 595 total aligned reads displayed.

CGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTG  >  CP009273/4047430‑4047564
                                                                   |                                                                   
   ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt                                                                  <  1:14502352/68‑1 (MQ=255)
   ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt                                                                  <  1:27968913/68‑1 (MQ=255)
   ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt                                                                  <  1:8590031/68‑1 (MQ=255)
   ccAGCTGTCCGGTGGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt                                                                  <  1:17153755/68‑1 (MQ=255)
      gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt                                                                  >  1:14692230/1‑65 (MQ=255)
      gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt                                                                  >  1:20731484/1‑65 (MQ=255)
        tGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagt                                                               <  1:9393797‑M1/66‑7 (MQ=255)
        tGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATcc                                                                <  1:25083270/65‑1 (MQ=255)
        tGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa                                                             >  1:22449144/1‑68 (MQ=255)
         gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa                                                            <  1:18275056/68‑1 (MQ=255)
            cGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa                                                         <  1:15600079/68‑1 (MQ=255)
             ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCaa                                                        <  1:11374702/68‑1 (MQ=255)
             ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa                                                         >  1:6497461/1‑67 (MQ=255)
               ttGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac                                                       <  1:29058278/67‑1 (MQ=255)
                tGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCACATCCTGAATCAac                                                       >  1:7522659/1‑66 (MQ=255)
                tGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAaca                                                      <  1:13792447/67‑1 (MQ=255)
                tGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac                                                       >  1:4946098/1‑66 (MQ=255)
                 gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCCACACt                                                    <  1:1174587/68‑1 (MQ=255)
                 gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt                                                    <  1:16188857/68‑1 (MQ=255)
                       gCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc                                              >  1:18800902‑M2/1‑65 (MQ=255)
                       gCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc                                              >  1:16002903‑M2/1‑65 (MQ=255)
                        cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgc                                              >  1:24240341‑M1/1‑44 (MQ=255)
                           aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccg                                           >  1:4515005‑M1/1‑41 (MQ=255)
                           aGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccg                                           <  1:22320992‑M2/67‑7 (MQ=255)
                              aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                        <  1:24295513‑M2/67‑10 (MQ=255)
                              aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                        <  1:10291504‑M2/67‑10 (MQ=255)
                              aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                        <  1:14959545‑M2/67‑10 (MQ=255)
                              aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcg                                        <  1:32250277‑M2/67‑10 (MQ=255)
                              aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                       <  1:18100018/68‑1 (MQ=255)
                              aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                       <  1:9137441/68‑1 (MQ=255)
                              aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                       <  1:8792086/68‑1 (MQ=255)
                               ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                       >  1:38257922/1‑67 (MQ=255)
                               ctctCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCggcggc                                      <  1:37436484/68‑1 (MQ=255)
                                tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                     >  1:26162146/1‑68 (MQ=255)
                                tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                     >  1:39025019/1‑68 (MQ=255)
                                tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                     <  1:15137133/68‑1 (MQ=255)
                                tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                     <  1:17398602/68‑1 (MQ=255)
                                gctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc                                     <  1:12891609/67‑1 (MQ=255)
                                 ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaact                                    >  1:112373‑M2/1‑55 (MQ=255)
                                 ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                    <  1:26510562/68‑1 (MQ=255)
                                  tcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCAt                                   <  1:30194649/68‑1 (MQ=255)
                                   ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgt                                  >  1:20594349‑M1/1‑33 (MQ=255)
                                   ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgt                                  >  1:30890256‑M1/1‑33 (MQ=255)
                                   ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgt                                  >  1:25929515‑M1/1‑33 (MQ=255)
                                   ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                  >  1:8430583/1‑68 (MQ=255)
                                   ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                  >  1:28484784/1‑68 (MQ=255)
                                   ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                  >  1:25756451/1‑68 (MQ=255)
                                   ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                  >  1:12052865/1‑68 (MQ=255)
                                   ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGCCCATc                                  >  1:17782873/1‑68 (MQ=255)
                                       aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc                               <  1:1011220/67‑1 (MQ=255)
                                        aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCga                             >  1:19082063/1‑67 (MQ=255)
                                        aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                             >  1:25544802/1‑68 (MQ=255)
                                        aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                             >  1:21944602/1‑68 (MQ=255)
                                        aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                             >  1:5566380/1‑68 (MQ=255)
                                        aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                             >  1:33683688/1‑68 (MQ=255)
                                        aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt                             >  1:19583137/1‑68 (MQ=255)
                                          cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                           >  1:27607678/1‑68 (MQ=255)
                                          cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                           >  1:21730765/1‑68 (MQ=255)
                                          cGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTa                           >  1:19995467/1‑68 (MQ=255)
                                           gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAg                          <  1:29893925/68‑1 (MQ=255)
                                              gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg                       >  1:38500315‑M2/1‑42 (MQ=255)
                                              gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacg                       >  1:19235398‑M2/1‑42 (MQ=255)
                                               aTTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCa                       >  1:14058781/1‑67 (MQ=255)
                                                ttCAAACCGTCCCCCGGGCAAAGCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggt                     >  1:9701484‑M2/1‑40 (MQ=255)
                                                ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggt                     >  1:22694625‑M2/1‑40 (MQ=255)
                                                ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc                     >  1:6697475/1‑68 (MQ=255)
                                                  cAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCgg                   <  1:13287851/68‑1 (MQ=255)
                                                     aCAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcgg                >  1:36446343‑M1/1‑15 (MQ=255)
                                                     aCAGTTCGCCGGGCAAATCCTGAATCACCACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                >  1:21338934/1‑68 (MQ=255)
                                                     aCAGTTCGCCGGGCAAATCCTGAATCAACCCTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                >  1:27284086/1‑68 (MQ=255)
                                                     aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcgg                >  1:29496415‑M2/1‑35 (MQ=255)
                                                     aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcgg                >  1:32653641‑M2/1‑35 (MQ=255)
                                                     aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                >  1:59851/1‑68 (MQ=255)
                                                     aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                >  1:23871481/1‑68 (MQ=255)
                                                     aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                >  1:34852198/1‑68 (MQ=255)
                                                     aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                >  1:34670019/1‑68 (MQ=255)
                                                     aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg                >  1:29269148/1‑68 (MQ=255)
                                                      cAGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcgga               >  1:21052371‑M1/1‑14 (MQ=255)
                                                      cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg               >  1:24592945/1‑68 (MQ=255)
                                                      cAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg               >  1:34266159/1‑68 (MQ=255)
                                                       aGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggag              >  1:4660823‑M1/1‑13 (MQ=255)
                                                       aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt              >  1:23290696/1‑68 (MQ=255)
                                                       aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt              >  1:2684743/1‑68 (MQ=255)
                                                         gcCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt            <  1:31621035‑M1/66‑1 (MQ=255)
                                                         gcCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt            <  1:12568924‑M1/66‑1 (MQ=255)
                                                          tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt            <  1:32962101/67‑1 (MQ=255)
                                                          tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt            <  1:31013409/67‑1 (MQ=255)
                                                          tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt            <  1:30800315/67‑1 (MQ=255)
                                                          tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt              <  1:38693235/65‑1 (MQ=255)
                                                          tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt              <  1:22957557/65‑1 (MQ=255)
                                                          tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt              <  1:37237802/65‑1 (MQ=255)
                                                          tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt              <  1:3695794/65‑1 (MQ=255)
                                                          tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtt           >  1:35583465/1‑68 (MQ=255)
                                                           cGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagt           <  1:3594724‑M1/67‑59 (MQ=255)
                                                             ccGGGCAggaagtgttgattcaggatttgcccggcgaactggttgcatcaacggttgcggagagtact        >  1:1650603‑M1/1‑7 (MQ=255)
                                                             CCGGGCAAATCCTGAATCAACACATCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt         <  1:31950497‑M1/67‑1 (MQ=255)
                                                              cGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtact        >  1:16682770‑M1/1‑6 (MQ=255)
                                                               gggCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtacttc      >  1:4363446‑M1/1‑5 (MQ=255)
                                                                 gCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtacttcg     <  1:30450475‑M1/67‑65 (MQ=255)
                                                                  CAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCa      <  1:33318847‑M1/65‑1 (MQ=255)
                                                                   |                                                                   
CGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTG  >  CP009273/4047430‑4047564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.