| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 4,173,033 | 63 bp x 2 | 46.4% | duplication | rpoB → | RNA polymerase, beta subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4173033 = | 536 (1.140) | 505 (1.150) | 69/104 | NT | 46.4% | coding (1861/4029 nt) | rpoB | RNA polymerase, beta subunit |
| ? | CP009273 | = 4173095 | 669 (1.530) | coding (1923/4029 nt) | rpoB | RNA polymerase, beta subunit | |||||
Only 100 of 591 total aligned reads displayed.
AAGCTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4173103‑4173033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaTTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGAGTTC < CP009273/4173095‑4173029 AAGCTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTT > 1:23614633/1‑68 CTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA > 1:14859408/1‑68 CTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA > 1:25702034/1‑68 CTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA > 1:18326389/1‑68 CTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA > 1:7634790/1‑68 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGC < 1:15697341/68‑1 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGC < 1:2165373/68‑1 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGC < 1:24519343/68‑1 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCG < 1:35370773/67‑1 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCG < 1:19443448/67‑1 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCG < 1:38798314/67‑1 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCG < 1:10169774/67‑1 gCGCCTGTGCTACGGCAAGTTACCAGGTCATCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCC < 1:3083728/67‑1 TCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCc > 1:31067763/1‑65 TCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCC < 1:16529381/68‑1 TCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCC < 1:4212285/68‑1 TCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCC < 1:28729996/68‑1 CGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCT < 1:7255464/68‑1 CGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCT < 1:24790543/68‑1 CGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTGCTTCATCCAAGTGGGATTCGCCT < 1:35229512/68‑1 GCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTAC > 1:14473081/1‑68 GCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTAGCCTTTGCTAC > 1:2270577/1‑68 TACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACG > 1:18891670/1‑67 TACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACG > 1:31808314/1‑67 CGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCA < 1:12478876/68‑1 CAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGT > 1:22027413/1‑68 AAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTT < 1:17778608/68‑1 AAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTT < 1:30001519/68‑1 AAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGT < 1:322454/67‑1 AAGTTACCAGGTCTTCTACGAAGTGGCCATCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGT < 1:13321782/67‑1 AGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTA < 1:9790506/68‑1 AGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTA < 1:29125463/68‑1 CAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGT < 1:26822617/68‑1 CAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGT < 1:8230277/68‑1 CAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGT < 1:3983894/68‑1 CAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGT < 1:13848296/68‑1 CAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTAACAGG > 1:30646033/1‑67 GGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:32518929/1‑68 GGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:29506039/1‑68 GGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:26044104/1‑68 GGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:11470823/1‑68 GGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:20058548/1‑68 GGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTAGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:26312474/1‑68 GTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:14297500/1‑67 TCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:18643046/1‑66 TCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:20902768/1‑66 CTTCTACGAAGTGGCCTTCTTCATCCAGGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCT > 1:6782668/1‑68 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCTAGTTACCAGGTCTTC < 1:28007003/67‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCT < 1:11658394/68‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCT < 1:11271585/68‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCT < 1:174529/68‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:10561941/67‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:37699244/67‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:36866841/67‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:34921682/67‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:25335602/67‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:21289742/67‑1 TTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCT > 1:34194867/1‑67 TACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGA > 1:4608755/1‑68 TACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGA > 1:23040991/1‑68 TACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGA > 1:33051045/1‑68 TACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGAAAGTTACCAGGTCTTCTACGA > 1:27656743/1‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:36287365/1‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:8950020/1‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:6349249/1‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:5826316/1‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:15924837/1‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:37057474/1‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:3213628/1‑68 ACGAAGTGGCCTGCTTCATCCAAGATGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA < 1:8508089/68‑1 GAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGT > 1:29615223/1‑68 AAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTG > 1:38363919/1‑68 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGG < 1:25137744/68‑1 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGG < 1:16195465/68‑1 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTG > 1:33942350/1‑67 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTG > 1:1543897/1‑67 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTG > 1:23949791/1‑67 CCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTT < 1:21067499/67‑1 CCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTT < 1:28399278/67‑1 CCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCT > 1:10923356/1‑66 CTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCT < 1:5360381/68‑1 CTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCT < 1:12909042/68‑1 CTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTC < 1:31366777/67‑1 TCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTC < 1:19716778/68‑1 CTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCA < 1:1721091/68‑1 CTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCA < 1:18025582/68‑1 TTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCAT < 1:24283538/68‑1 TTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCA > 1:482937/1‑67 TCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCAT > 1:16866816/1‑67 TCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCAT > 1:35707274/1‑67 CATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCC < 1:34623877/68‑1 TCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAA < 1:5094983/68‑1 TCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAA < 1:14038067/68‑1 TCCAAGATGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAA < 1:27287293/68‑1 CCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAG > 1:38044533/1‑68 CAAGGTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGT < 1:2148328/68‑1 AGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTG > 1:9266858/1‑68 TTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA > 1:12203363/1‑68 TTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA > 1:33478221/1‑68 TGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA < 1:32727537/67‑1 AAGCTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4173103‑4173033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaTTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGAGTTC < CP009273/4173095‑4173029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |