| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 4,173,033 | 63 bp x 2 | 46.4% | duplication | rpoB → | RNA polymerase, beta subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4173033 = | 536 (1.140) | 505 (1.150) | 69/104 | NT | 46.4% | coding (1861/4029 nt) | rpoB | RNA polymerase, beta subunit |
| ? | CP009273 | = 4173095 | 669 (1.530) | coding (1923/4029 nt) | rpoB | RNA polymerase, beta subunit | |||||
Only 100 of 1315 total aligned reads displayed.
TGTAACTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAG > CP009273/4172966‑4173100 | tgtAACTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACt < 1:24753668/68‑1 (MQ=255) gtAACTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACt > 1:32720330/1‑67 (MQ=255) ctccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCa > 1:4813847‑M1/65‑68 (MQ=255) aaCTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCa > 1:5089121/1‑68 (MQ=255) aaCTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCa > 1:21071069/1‑68 (MQ=255) aaCTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCa > 1:16740486/1‑68 (MQ=255) aaCTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCa > 1:34974694/1‑68 (MQ=255) aaCTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCa > 1:35280728/1‑68 (MQ=255) aaCTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCa > 1:20056973/1‑68 (MQ=255) aaCTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCa > 1:4394197/1‑68 (MQ=255) aaCTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCa > 1:11202417/1‑68 (MQ=255) ccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCa < 1:25178651‑M1/4‑1 (MQ=255) caacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACt > 1:9266858‑M1/62‑68 (MQ=255) cttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTgg > 1:3799950‑M1/59‑68 (MQ=255) cttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTgg > 1:36246811‑M1/59‑68 (MQ=255) cttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTgg > 1:11513579‑M1/59‑68 (MQ=255) cttgcatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTgg > 1:32375001‑M1/59‑68 (MQ=255) ttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGa < 1:17972750‑M1/11‑1 (MQ=255) aTTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATga < 1:29448253/68‑1 (MQ=255) agaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATgaa > 1:21644589‑M1/53‑67 (MQ=255) gaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATgaaga < 1:19716778‑M1/17‑1 (MQ=255) ataaggccacttcgtagaagtcctggtaacttgccttatcaaaggcgaaTCCAACTTGGATGaagaag > 1:36613592‑M1/50‑68 (MQ=255) agaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGaagaag < 1:7138482‑M1/19‑1 (MQ=255) aCCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAgg > 1:17022568/1‑67 (MQ=255) aCCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAgg > 1:2049385/1‑67 (MQ=255) aCCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAgg > 1:15140420/1‑67 (MQ=255) ccTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGcc > 1:33943208/1‑68 (MQ=255) ccTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGcc > 1:10017901/1‑68 (MQ=255) ccTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGcc > 1:12226868/1‑68 (MQ=255) ccTGTCTGCTATCGAAGAACGCAACTACGTTATCGCCCAGGCTAACTCCAACTTGGATGAACAAGGcc > 1:8791428/1‑68 (MQ=255) aggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAgg > 1:36918502‑M1/47‑66 (MQ=255) cTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGcc > 1:19420112/1‑67 (MQ=255) gccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGCAGGcc < 1:34323162‑M1/22‑1 (MQ=255) gccacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGcc < 1:32009002‑M1/22‑1 (MQ=255) gTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACt < 1:7471960/68‑1 (MQ=255) gTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACt < 1:12560004/68‑1 (MQ=255) gTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACt < 1:1300423/68‑1 (MQ=255) cacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACt > 1:14424377‑M1/43‑67 (MQ=255) cacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACt > 1:11813935‑M1/43‑67 (MQ=255) cacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACt > 1:30663514‑M1/43‑67 (MQ=255) cacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACt > 1:32987646‑M1/43‑67 (MQ=255) cacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACt > 1:7996732‑M1/43‑67 (MQ=255) cacttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACt > 1:17399188‑M1/43‑67 (MQ=255) acttcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTc < 1:17667099‑M1/27‑1 (MQ=255) tGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCg > 1:35964642/1‑68 (MQ=255) gCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCgc > 1:31728640/1‑67 (MQ=255) gCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGt < 1:33304087/68‑1 (MQ=255) gCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGt < 1:25561294/68‑1 (MQ=255) gCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGt < 1:21957537/68‑1 (MQ=255) tcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTa > 1:23040991‑M1/39‑68 (MQ=255) tcgtagaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTa > 1:5394845‑M1/39‑68 (MQ=255) cTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTa > 1:6832749/1‑68 (MQ=255) aTCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTaga > 1:2358732/1‑68 (MQ=255) aTCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTaga > 1:16371646/1‑68 (MQ=255) aTCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTaga > 1:22385721/1‑68 (MQ=255) gaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTagaag < 1:37699244‑M1/34‑1 (MQ=255) gaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTagaag < 1:18659411‑M1/34‑1 (MQ=255) gaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTagaag < 1:2135469‑M1/34‑1 (MQ=255) gaagacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAACAAGGCCTCTTCGTagaag < 1:39071313‑M1/34‑1 (MQ=255) gaagaaGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTagaaga < 1:6173682/68‑1 (MQ=255) aagaagGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTagaaga > 1:2673636/1‑67 (MQ=255) agacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTagaaga > 1:14080927‑M1/32‑66 (MQ=255) agacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTagaaga < 1:15723706‑M1/35‑1 (MQ=255) agacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGAcc > 1:38381002‑M1/32‑68 (MQ=255) agacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGAc > 1:16034009‑M1/32‑67 (MQ=255) agacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGAc > 1:27805291‑M1/32‑67 (MQ=255) agaagGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGAcc < 1:1890950/68‑1 (MQ=255) agaagGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGAcc < 1:15391200/68‑1 (MQ=255) agaagGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGAc < 1:30245722/67‑1 (MQ=255) gacctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTagaaga < 1:35546446‑M1/35‑1 (MQ=255) acctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACctc < 1:24390055‑M1/39‑2 (MQ=255) acctggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTg < 1:29633302‑M1/39‑1 (MQ=255) tggtaacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTa > 1:8973083‑M1/27‑68 (MQ=255) cAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGt < 1:25976677/66‑1 (MQ=255) taacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACt < 1:27428603‑M1/45‑1 (MQ=255) taacttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACt < 1:28121232‑M1/45‑1 (MQ=255) aCTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACt > 1:5873902/1‑68 (MQ=255) tACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACtt > 1:37394823/1‑67 (MQ=255) acttgccgtagcaaaggcgaaTCCAACTTGGATGAAGCAGGCCACTTCGTAGAAGACCTGGTAACtt < 1:9573918‑M1/46‑1 (MQ=255) acttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACtt < 1:23979617‑M1/46‑1 (MQ=255) ttgccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGcc > 1:8291180‑M1/20‑68 (MQ=255) tATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTa < 1:10924994/68‑1 (MQ=255) ccgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTa > 1:28693147‑M1/17‑68 (MQ=255) cgtagcaaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTa > 1:31273214‑M1/16‑67 (MQ=255) aTCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTa > 1:27128890/1‑67 (MQ=255) gtagcaaaggctaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGc > 1:2270577‑M1/15‑68 (MQ=255) cccAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCaaa > 1:20852671/1‑68 (MQ=255) cccAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCaaa > 1:38690353/1‑68 (MQ=255) aaaggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAg < 1:6458327‑M1/58‑1 (MQ=255) aggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCg < 1:26200355‑M1/61‑1 (MQ=255) ggcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGa < 1:284229‑M1/62‑1 (MQ=255) gCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGa > 1:29099596/1‑68 (MQ=255) cGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGaa > 1:34738085/1‑68 (MQ=255) gAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGaa > 1:18387722/1‑67 (MQ=255) ctaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGaa > 1:4101809‑M1/5‑67 (MQ=255) cgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGaa < 1:13900672‑M1/63‑1 (MQ=255) cgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGaa > 1:10561596‑M1/5‑67 (MQ=255) cgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGCAGCAAAGGCGaa > 1:30906277‑M1/5‑67 (MQ=255) cTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtcca > 1:13421396‑M2/1‑64 (MQ=255) aTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCa > 1:14705197‑M1/2‑68 (MQ=255) | TGTAACTGACGAAATTCACTACCTGTCTGCTATCGAAGAAGGCAACTACGTTATCGCCCAGGCGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAG > CP009273/4172966‑4173100 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |