| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 4,173,033 | 63 bp x 2 | 46.4% | duplication | rpoB → | RNA polymerase, beta subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4173033 = | 536 (1.140) | 505 (1.150) | 69/104 | NT | 46.4% | coding (1861/4029 nt) | rpoB | RNA polymerase, beta subunit |
| ? | CP009273 | = 4173095 | 669 (1.530) | coding (1923/4029 nt) | rpoB | RNA polymerase, beta subunit | |||||
Only 100 of 1353 total aligned reads displayed.
CGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCACCCAGCAGGTGGTATCCGT > CP009273/4173028‑4173160 | gcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGaa < 1:24519343‑M1/63‑1 (MQ=255)gcgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGaa < 1:15619082‑M1/63‑1 (MQ=255)cGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGaa > 1:24798684/1‑68 (MQ=255)cGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGaa > 1:28022357/1‑68 (MQ=255) cgaaTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGaa > 1:18536883‑M1/5‑67 (MQ=255) TCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCa < 1:20403960‑M1/67‑1 (MQ=255) TCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAg > 1:36131757‑M1/1‑68 (MQ=255) cAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaact > 1:9266858‑M2/1‑61 (MQ=255) cTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttgg < 1:5222207‑M2/68‑11 (MQ=255) cTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGt > 1:31703316/1‑68 (MQ=255) ttGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttgta < 1:15355471‑M2/68‑12 (MQ=255) ttGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGt > 1:6825740/1‑67 (MQ=255) ggATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatg < 1:34623877‑M2/68‑14 (MQ=255) aTGAAGAACGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatga > 1:37410214‑M2/1‑53 (MQ=255) tGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaa > 1:34895045‑M2/1‑52 (MQ=255) agaagaagGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaa > 1:21644589‑M2/2‑52 (MQ=255) agaagGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCcgcg < 1:20720575/68‑1 (MQ=255) agaagGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCcgc < 1:33910656/67‑1 (MQ=255) gaagGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaag < 1:19560706‑M2/67‑20 (MQ=255) gaagGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCcgcg > 1:7134434/1‑67 (MQ=255) gaagGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCcgcg > 1:7922037/1‑67 (MQ=255) gaagGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTAAAGcctcc > 1:28766132/1‑64 (MQ=255) agGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaagg > 1:35706999‑M2/1‑46 (MQ=255) agGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaagg > 1:21370390‑M2/1‑46 (MQ=255) gCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggcc < 1:31947979‑M2/66‑23 (MQ=255) ccACTTCTTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAgg > 1:30632632/1‑68 (MQ=255) ccACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccact < 1:13964042‑M2/68‑26 (MQ=255) ccACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccac > 1:36981267‑M2/1‑43 (MQ=255) ccACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAgg > 1:10043824/1‑68 (MQ=255) ccACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAgg > 1:22520415/1‑68 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccactt > 1:418647‑M2/1‑42 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccactt > 1:29561319‑M2/1‑42 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccact > 1:32987646‑M2/1‑42 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccact > 1:6354333‑M2/1‑42 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAgg < 1:4845014/67‑1 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAgg < 1:28397678/67‑1 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAgg < 1:14666029/67‑1 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAgg < 1:16882683/67‑1 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAgg < 1:30915210/67‑1 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGt < 1:32528305/68‑1 (MQ=255) cACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGt < 1:25604971/68‑1 (MQ=255) aCTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttc < 1:17667099‑M2/68‑28 (MQ=255) ttCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgt > 1:38632703‑M2/1‑39 (MQ=255) ttCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTg > 1:22887146/1‑67 (MQ=255) ttCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTg > 1:33665415/1‑67 (MQ=255) ttCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGa < 1:27429236/68‑1 (MQ=255) cGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACt < 1:11849299/68‑1 (MQ=255) cGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACt < 1:23345077/68‑1 (MQ=255) cGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACt < 1:16178172/68‑1 (MQ=255) agaagaCCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaag < 1:20033416‑M2/68‑35 (MQ=255) agaagaCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTAc < 1:9678059/67‑1 (MQ=255) agaagaCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTAc < 1:27840122/67‑1 (MQ=255) agaagaCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTAc < 1:5750501/67‑1 (MQ=255) gaagaCCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaag < 1:25896174‑M2/67‑35 (MQ=255) gaagaCCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaag < 1:26721733‑M2/67‑35 (MQ=255) gaagaCCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaag < 1:18240822‑M2/67‑35 (MQ=255) gaagaCCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaacaaggcctcttcgtagaag < 1:39071313‑M2/67‑35 (MQ=255) gaagaCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACAt > 1:30223195/1‑68 (MQ=255) gaagaCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACAt > 1:22088272/1‑68 (MQ=255) agaCCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaagac > 1:14297500‑M2/1‑31 (MQ=255) agaCCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaaga > 1:21048725‑M2/1‑31 (MQ=255) agaCCTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggaagaagaagtccacttcgtagaaga < 1:11333237‑M2/66‑36 (MQ=255) agaCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATgg > 1:24262496/1‑68 (MQ=255) agaCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATgg > 1:35110892/1‑68 (MQ=255) agaCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATgg < 1:17940686/68‑1 (MQ=255) aCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGAc > 1:34254098/1‑68 (MQ=255) aCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGAc > 1:38084515/1‑68 (MQ=255) aCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGAc > 1:8540867/1‑68 (MQ=255) aCCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGAc > 1:14955455/1‑68 (MQ=255) ccTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGa < 1:15863707/66‑1 (MQ=255) ccTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACg < 1:8298766/68‑1 (MQ=255) ccTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACg < 1:10751942/68‑1 (MQ=255) ccTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACg < 1:12805131/68‑1 (MQ=255) ccTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACg < 1:13147182/68‑1 (MQ=255) ccTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACg < 1:37827452/68‑1 (MQ=255) cTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggt > 1:4449739‑M2/1‑27 (MQ=255) cTGGTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggt > 1:17196943‑M2/1‑27 (MQ=255) tGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTa < 1:25228731/68‑1 (MQ=255) gTAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaaccaggccacgtcgtagaacacctcgtaaa < 1:36674182‑M2/68‑45 (MQ=255) tAACTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaact < 1:11123868‑M2/68‑46 (MQ=255) aCTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaactt < 1:322454‑M2/67‑47 (MQ=255) aCTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaactt < 1:26176724‑M2/67‑47 (MQ=255) aCTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCa > 1:12234430/1‑67 (MQ=255) cTTGCCGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgc > 1:29891472‑M2/1‑20 (MQ=255) tGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCACCca > 1:19257448/1‑68 (MQ=255) cGTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgta > 1:18891670‑M2/1‑15 (MQ=255) cGGAGCAAAGGCGACtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtag > 1:23757333‑M2/1‑15 (MQ=255) gTAGCAAAGGCTAAtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagc > 1:1981891‑M2/1‑14 (MQ=255) gTAGCAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagc > 1:35353338‑M2/1‑14 (MQ=255) aGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCACCCAGCAgg < 1:23995929/67‑1 (MQ=255) cAAAGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaag < 1:11580516‑M2/68‑59 (MQ=255) aaaGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaagg > 1:33177933‑M2/1‑9 (MQ=255) aaaGGCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaa > 1:31239971‑M2/1‑9 (MQ=255) aaaGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCACCCAGCAggtggt < 1:895400/68‑1 (MQ=255) ggCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcga < 1:13560728‑M2/68‑63 (MQ=255) ggCGAAtccaacttggatgaagaaggccacttcgtagaacacctggtaacttgccgtagcaaaggcga < 1:16562597‑M2/68‑63 (MQ=255) gCGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaa < 1:27103934‑M2/68‑64 (MQ=255) gCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCACCCAGCAGGTGGTATcc > 1:29126993/1‑68 (MQ=255) cGAAtccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggcgaa > 1:10561596‑M2/1‑4 (MQ=255) cGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCACCCAGCAGGTGGTATcc < 1:7519597/67‑1 (MQ=255) | CGAACTCCAACTTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCACCCAGCAGGTGGTATCCGT > CP009273/4173028‑4173160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |