| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4364315 = | NA (NA) | 4 (0.010) | 3/98 | NT | NA | noncoding (1/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4364345 = | NA (NA) | noncoding (31/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 190 total aligned reads displayed.
CTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4364388‑4364315‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAAT > CP009273/4364345‑4364408 ACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATC < 1:37693361/68‑1 ACATCGTGCATCGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATC < 1:31373170/68‑1 ATCGTGCATTGAAATTGAATTGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG < 1:18309111/68‑1 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:3350497/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:33576880/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:33260533/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:3310930/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:32531238/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG < 1:32410941/68‑1 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:32365030/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG < 1:32066885/68‑1 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:32033656/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:32008643/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:30972726/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:30748277/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:30547549/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:29951277/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:29717826/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:2871202/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:27910644/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:27540769/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG < 1:27245380/68‑1 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG < 1:471083/68‑1 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:9881014/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:9399972/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:9210805/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:8641491/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:8008641/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:7679605/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:5623456/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:5529982/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:5205495/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:28902437/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:37678496/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:37132257/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:3690628/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:36332966/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:36169847/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:35572681/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:35066920/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:34465202/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:34251703/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:1334734/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:18875234/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:18486428/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:17681691/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:16756415/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:16620683/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:16386032/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:16236037/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:14716584/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:14567846/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG < 1:13745617/68‑1 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:25172664/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:13026190/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:12710260/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:12292313/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:12121482/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:11926503/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:11408060/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:10947483/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:10742557/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:10169602/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:19713062/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:26856798/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:24883537/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:24736893/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:24062915/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:22945550/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:20806710/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:19842824/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCC > 1:20750074/1‑67 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCAACCG > 1:4882917/1‑68 ATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACACTGCATCCG > 1:30203126/1‑68 ATCGTGCATTGAAAATGAATCGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCG > 1:28593238/1‑68 ATCCTGCATTGAAATTGAATGGAATTGCAATGAACTGTAGGCAGGATAAGGCGTTTACGCTGCATCCG > 1:27980687/1‑68 TCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGG < 1:1978378/68‑1 TCGTGCATTGAAATGGAATCGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGG < 1:16207389/68‑1 CGGATAAGGCGTTTACGCTGCATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAT < 1:28084807/68‑1 CGGATAAGGCGTTTACGCTGCATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAT < 1:29151017/68‑1 TCCGGCCTACAGTTCATTGCGAATCCATTCAAGGTCAATGCACGATGTAGGCCTGATAAGCGTAGCGA > 1:8717421/1‑68 TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGA > 1:14432/1‑68 TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGA > 1:11615842/1‑68 TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGA > 1:6938717/1‑68 TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGA > 1:15377708/1‑68 TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGA > 1:38658917/1‑68 TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGA > 1:29501333/1‑68 TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGA < 1:25120035/68‑1 TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGA > 1:37499140/1‑68 TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGA > 1:22075107/1‑68 TCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGC > 1:4651813/1‑52 TCCGGCCGACAGTTCATTGCAAATCCATTCAATTTCAATGCCCGATGTAGGCCTGATAAGCGTAGCGA > 1:10129388/1‑68 CCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAt > 1:13846958/1‑67 CCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAA > 1:15582869/1‑68 CCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAA > 1:7028311/1‑68 CCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCGGATAAGCGTAGCGAA > 1:19281997/1‑68 CCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTA > 1:24211805/1‑48 CGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAAT < 1:38172597/68‑1 CGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAA > 1:38832832/1‑67 CGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAA > 1:35697160/1‑67 CTACATCGTGCATTGAAATTGAATGGATTTGCAATGAACTGTAGGCCGGATAAGGCGTTTACGCTGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4364388‑4364315‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAAT > CP009273/4364345‑4364408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |