| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4364315 = | NA (NA) | 4 (0.010) | 3/98 | NT | NA | noncoding (1/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4364345 = | NA (NA) | noncoding (31/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 520 total aligned reads displayed.
TAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGG > CP009273/4364279‑4364412 | tAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCt < 1:7123010/68‑1 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:9684431/1‑68 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:32783546/1‑68 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:33856505/1‑68 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:35256070/1‑68 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:35718455/1‑68 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:38029969/1‑68 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:20771513/1‑68 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:4437577/1‑68 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:12491328/1‑68 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:6285475/1‑68 (MQ=255) gACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAg > 1:8313429/1‑68 (MQ=255) ggTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCa > 1:7953637/1‑68 (MQ=255) gTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTCTCCGGCCTACAGTTCAt > 1:7564092/1‑68 (MQ=255) gTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCAt > 1:14061660/1‑68 (MQ=255) ttGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGt < 1:20559191/63‑1 (MQ=255) ttGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGt < 1:3842348/63‑1 (MQ=255) ttGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGt < 1:234063/63‑1 (MQ=255) ttGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGt < 1:5710955/63‑1 (MQ=255) ttGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCAtt > 1:19497157/1‑68 (MQ=255) tGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCAtt < 1:10447490/67‑1 (MQ=255) aCTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTGCAGTTCATTGCAAATc > 1:9497055/1‑68 (MQ=255) aCTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAAt > 1:10838864/1‑67 (MQ=255) aCTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAAt > 1:31860843/1‑67 (MQ=255) aCTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAAt > 1:34657818/1‑67 (MQ=255) aCTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAAt > 1:16590016/1‑67 (MQ=255) aCTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAAt > 1:13136297/1‑67 (MQ=255) aCTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAAt > 1:27354766/1‑67 (MQ=255) cGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttc > 1:23788388/1‑68 (MQ=255) cGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttc > 1:25013972/1‑68 (MQ=255) cGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttc > 1:25822001/1‑68 (MQ=255) cGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttc > 1:26737036/1‑68 (MQ=255) cGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttc > 1:5024625/1‑68 (MQ=255) tctTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttcaatttcaat > 1:11258692/1‑67 (MQ=255) tctTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttcaatttcaat > 1:324848/1‑67 (MQ=255) ctTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGc < 1:31441054/68‑1 (MQ=255) cggataaggcgtttacgctgcatccggcCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt < 1:28084807‑M2/40‑1 (MQ=255) CGGATGCAGCGTAACCGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:33409767‑M1/1‑68 (MQ=255) CGGATGCAGCGTAACCGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:7027732‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCTGCCTACAGTTCATTGCAATTCCATTCAATTTCAATGCAGGAt > 1:27980687‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTGATTGCAAATCCATTCAATTTGAATGCACGAt < 1:21336808‑M1/68‑1 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGa > 1:15510233‑M1/1‑67 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:11468700‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:30748277‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:29687154‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:11926503‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt < 1:32066885‑M1/68‑1 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:32290346‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:5623456‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:4789593‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:15198215‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:33149187‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:36983686‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:36467991‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:36169847‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:33576880‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:14716584‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:1383661‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:30532804‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:9210805‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:24062915‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:15616698‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:24808281‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:25172664‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:26856798‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:27910644‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:28699412‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:19592649‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:19842824‑M1/1‑68 (MQ=255) CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGAt > 1:17681691‑M1/1‑68 (MQ=255) ATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGt > 1:29340853‑M1/1‑67 (MQ=255) gCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAgg < 1:1921473/68‑1 (MQ=255) gCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAgg < 1:36751356/68‑1 (MQ=255) gCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAgg < 1:20843514/68‑1 (MQ=255) gCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAgg < 1:38842558/68‑1 (MQ=255) gCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAgg < 1:24719788/68‑1 (MQ=255) gCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAg > 1:27578619/1‑67 (MQ=255) gTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGcc < 1:12796938/65‑1 (MQ=255) gTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGa < 1:24523972/68‑1 (MQ=255) gTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGa < 1:34093365/68‑1 (MQ=255) gTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGa > 1:28926877/1‑68 (MQ=255) gTAAACGACTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATTCACGATGTAGGcc < 1:22964412/65‑1 (MQ=255) cGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGc < 1:18467102/68‑1 (MQ=255) cGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGc < 1:18671917/68‑1 (MQ=255) cGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGc > 1:3014101/1‑68 (MQ=255) cGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGc > 1:13449248/1‑68 (MQ=255) cGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGc > 1:16320059/1‑68 (MQ=255) cGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGc < 1:1679577/68‑1 (MQ=255) ccTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGt > 1:13700443/1‑68 (MQ=255) ccTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGt > 1:3555705/1‑68 (MQ=255) ccTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGt > 1:17365240/1‑68 (MQ=255) cTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGt < 1:31145515/67‑1 (MQ=255) tATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGc > 1:1822836/1‑68 (MQ=255) tccggcCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGGCTGAGAAGCGTAGCGa > 1:8671737‑M2/7‑68 (MQ=255) tccggcCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGa > 1:38658917‑M2/7‑68 (MQ=255) tccggcCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGa > 1:37499140‑M2/7‑68 (MQ=255) tccggcCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGa > 1:14432‑M2/7‑68 (MQ=255) tccggcCGACAGTTCATTGCAAATCCATTCAATTTCAATGCCCGATGTAGGCCTGATAAGCGTAGCGa > 1:10129388‑M2/7‑68 (MQ=255) ccggcCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGaa > 1:1227426‑M2/6‑68 (MQ=255) cTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAg < 1:22509418/67‑1 (MQ=255) | TAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGG > CP009273/4364279‑4364412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |