| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382210 | 145 (0.310) | 12 (0.030) | 9/96 | NT | 7.5% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 170 (0.420) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4382139‑4382210‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccttgGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT < CP009273/4382323‑4382261 AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:20584143/67‑1AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:24821793/67‑1AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:19301966/67‑1AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:6551896/67‑1AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA > 1:39090919/1‑67AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:32778585/67‑1AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:14907743/67‑1AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA < 1:14128778/67‑1 GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA > 1:25275260/1‑66 GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA > 1:33163768/1‑66 atTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:16500779/63‑1 AATGCGTAAATTACGAAAGCAAAATTATGTAGTACGCGGGAATAGCTCAGTTGGTATAGCACGAC < 1:11000988/65‑1 AATGCGAAAATTACGAAAGCAAAATTTAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:22181877/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTGAGTTGGTAGAGCACGACCT < 1:31078004/67‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT > 1:32015886/1‑68 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT > 1:2884075/1‑68 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT > 1:37696379/1‑68 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:31792471/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:31361931/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:30129420/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:30023020/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:36999416/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:2770161/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:25269905/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:6975068/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:8926448/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:2345227/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:26590447/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:12315806/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:12942872/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:11292641/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:11299011/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:16783980/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:17122675/65‑1 AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC < 1:18163552/65‑1 AATGCGAAAATTACGAAAGCAAAAGTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT > 1:6843393/1‑68 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:3974902/68‑1 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:3709819/68‑1 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:19963085/68‑1 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:3662744/68‑1 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:20365789/68‑1 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:12922131/68‑1 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:30459711/68‑1 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:33097352/68‑1 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:1213201/68‑1 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:316247/68‑1 ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:21437025/68‑1 acGCAAAATTAAGTCGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCT < 1:21318228/66‑1 AGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTA < 1:9117216/68‑1 AAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCA < 1:13640511/68‑1 CGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCC > 1:38680906/1‑66 GCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGG > 1:37314213/1‑68 CTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGG > 1:21933351/1‑67 CTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTGGGTGGT > 1:4260242/1‑68 GTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACAGCGCTATTCCCGCTTGGGGGGTCTGT > 1:28070457/1‑68 TGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCATCTGAGGTATTCGCGCTTGGGTGGTCTGT > 1:27893824/1‑66 TGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTG > 1:10307962/1‑67 TAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGT < 1:11287765/63‑1 TAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTATGTGCTTT > 1:15423799/1‑68 GCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCA > 1:15680389/1‑67 GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT < 1:7759700/68‑1 GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT < 1:21670235/68‑1 GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT < 1:25056224/68‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCTCTTGGGTGTTCTGTGCTTTGCAGCACTTT > 1:9408605/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT > 1:11876410/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT < 1:9935539/68‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTT < 1:1400758/67‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTT < 1:1445302/67‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTT < 1:17402564/67‑1 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTGTGCAGCACTTT > 1:7198921/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCGTTGCAGCACTTT > 1:7716631/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTG > 1:36306938/1‑54 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTGGGTGGTCTGTGCTTTGCAGCACTTT > 1:34116136/1‑68 CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTGGGTGGTCTGTGCTTTGCAGAACTTT > 1:37221186/1‑68 GGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTG < 1:15804544/39‑1 AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4382139‑4382210‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccttgGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT < CP009273/4382323‑4382261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |