| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382210 | 145 (0.310) | 12 (0.030) | 9/96 | NT | 7.5% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 170 (0.420) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
Only 100 of 293 total aligned reads displayed.
ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC > CP009273/4382143‑4382275 | aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:33097352‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:20365789‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:1213201‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:3662744‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:3709819‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:3974902‑M1/68‑1 (MQ=255) gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaa < 1:2714810‑M2/68‑4 (MQ=255) gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaa < 1:22055174‑M2/68‑4 (MQ=255) gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaa < 1:29559680‑M2/68‑4 (MQ=255) gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaa < 1:29892604‑M2/68‑4 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:15804552‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:32720806‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:3618928‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:23143558‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:3696908‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:16448357‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:28962926‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:9572421‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAAATAAGTACGCCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:22171308‑M2/1‑63 (MQ=255) tACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgt > 1:18328430‑M2/1‑59 (MQ=255) cGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgc > 1:13172349‑M2/1‑57 (MQ=255) aaaGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTc > 1:14353209/1‑68 (MQ=255) aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctcta < 1:9117216‑M1/68‑17 (MQ=255) aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc < 1:26101408/68‑1 (MQ=255) aaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGt < 1:25174434/68‑1 (MQ=255) aaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGt < 1:5577654/68‑1 (MQ=255) aaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGt < 1:22836321/68‑1 (MQ=255) aaTTAAGTAGTACTCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGtt < 1:13415354/68‑1 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGCGTTCGAg > 1:12755464/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:28134340/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:30443200/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:22678953/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:33840588/1‑66 (MQ=255) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAATGTCGGGTTAGCTAGTACGAGtcac > 1:28659782/1‑66 (MQ=14) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc < 1:31685316/68‑1 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:21276056/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:30745676/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:9410367/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:30286087/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:15501660/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:3503373/67‑1 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:24271717/67‑1 (MQ=39) actaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:6900841/65‑1 (MQ=25) gtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCg < 1:18440008/68‑1 (MQ=37) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCc < 1:7388556‑M2/38‑2 (MQ=255) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:31562156/1‑68 (MQ=33) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:27699610/1‑68 (MQ=33) cgcgGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctattccc > 1:35073521‑M2/1‑36 (MQ=255) cgcgGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:17442768/1‑67 (MQ=31) aTAGCTCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtact < 1:4337727‑M1/68‑41 (MQ=255) cTCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtgggtggt > 1:4260242‑M1/1‑24 (MQ=255) tGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaatttt > 1:9749824‑M1/1‑18 (MQ=255) tAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgt < 1:11287765‑M1/63‑49 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:17583688/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:3486158/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATATGatag > 1:14970412/1‑65 (MQ=0) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCAAAAATTTGatag > 1:2941757/1‑65 (MQ=0) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa < 1:31187772/67‑1 (MQ=31) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAg > 1:19874662/1‑68 (MQ=33) gCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgca > 1:15680389‑M1/1‑11 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:26630203/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:23536980/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:21753176/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:19539526/66‑1 (MQ=35) aCGACCTTGgcaaggtcgtgctctaccaactgagctattaccgcgtactacttaattttgctttcgta > 1:36035510‑M1/1‑9 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct > 1:10281203/1‑67 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct < 1:36830828/67‑1 (MQ=40) cGACCTTGCCTCGGTCGGGGTCGCGAGCTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:7608847/68‑1 (MQ=14) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:20940859/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:29239994/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:37353938/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:17313996/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:18179776/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:189676/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGGTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:36915954/68‑1 (MQ=255) gACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcact < 1:7759700‑M1/68‑62 (MQ=255) gACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaat < 1:14651654‑M1/68‑62 (MQ=255) aCCTTGgcaaggtcgtgctctaccaactgaactattcccgcgtactacttcattttgctttcgtaatt > 1:8632168‑M1/1‑6 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttt > 1:11876410‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcactt < 1:1400758‑M1/67‑63 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctgtgcagcacttt > 1:7198921‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtgggtggtctgtgctttgcagcacttt > 1:34116136‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:24699962‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:11427718‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:5201957‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:21684341‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:21422566‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:24579399‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:10494061‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcacgcgtactacttaattttgctttcgtaattt < 1:32589547‑M1/68‑64 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:37244647/68‑1 (MQ=255) ttGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattttc < 1:21494700‑M1/68‑66 (MQ=255) ttGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattttc < 1:9477480‑M1/68‑66 (MQ=255) ttGCCCAGGGCGGGGTCGCGAGTGCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:38549963/68‑1 (MQ=17) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:25961036/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:33703474/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:10683195/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:23990534/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:35421646/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:26839929/68‑1 (MQ=255) | ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC > CP009273/4382143‑4382275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |