| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4470776 | NA (NA) | 4 (0.010) | 4/64 | NT | NA | intergenic (+33/+23) | yjgN/valS | DUF898 family inner membrane protein/valyl‑tRNA synthetase |
| ? | CP009273 | = 4470752 | NA (NA) | intergenic (+9/+47) | yjgN/valS | DUF898 family inner membrane protein/valyl‑tRNA synthetase | |||||
Only 100 of 161 total aligned reads displayed.
AAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4470687‑4470776‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggccggagcatgctccggccttTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGCCTTT < CP009273/4470752‑4470687 AAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAA > 1:437653/1‑68 AAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAG > 1:16967943/1‑68 AGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAG > 1:19675914/1‑67 GGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGG > 1:13316864/1‑67 GGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGG > 1:26204123/1‑67 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:7052401/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:20810371/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:2059942/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:18727931/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:17265683/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:23665355/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:6545531/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:38327552/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:261209/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:14814321/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:35612742/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:9468460/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:33439503/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:29970567/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:13999494/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:8356192/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:1210438/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTGACCATTTCTGTAAGAGATAAAAAAGGCC > 1:37351400/1‑68 GCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTATTTAACATTTCTGTAAGAGATAAAAAAGGC > 1:12307428/1‑67 CTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGC < 1:28236605/66‑1 CTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGC < 1:4046048/66‑1 CTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGC < 1:19789751/66‑1 TCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGA < 1:30135384/68‑1 TCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGA < 1:31330934/68‑1 TCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGA < 1:30652069/68‑1 TCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGA > 1:24964476/1‑68 TCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGA < 1:9881499/68‑1 TCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGA < 1:16057416/68‑1 CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAG < 1:12459877/68‑1 CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAG < 1:35219450/68‑1 CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAG < 1:7863059/68‑1 CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAG < 1:36990351/68‑1 CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAG < 1:13647985/68‑1 CTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAG < 1:25942685/68‑1 TAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCA > 1:29261448/1‑68 TAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCA > 1:15632003/1‑68 GCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT > 1:4724963/1‑67 CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT > 1:31711621/1‑66 CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT > 1:11849229/1‑66 CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT > 1:35947029/1‑66 CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT > 1:37714251/1‑66 CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT > 1:38040845/1‑66 CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT > 1:39125962/1‑66 CCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT > 1:22892018/1‑66 CCAGTATTTCACGGGGAGTTATGCCTTCTTAACCATTTCTGTAAGAGATAAAAAAGGCCCGAGCAT > 1:15065219/1‑66 CAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGC < 1:22848751/67‑1 CAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGC < 1:13473914/67‑1 CAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGC > 1:12933034/1‑67 CAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGC > 1:12898010/1‑67 AGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCT > 1:555103/1‑67 ATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCG > 1:19542779/1‑67 CCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCGTTTTTTTCTCTTACAGAAATGGTA > 1:23982940/1‑68 GTAAGATATAAAAACGGCCGGAGCATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGC < 1:28207820/68‑1 AGATAAAAAAGGCCGGAGCATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATA > 1:27695959/1‑66 AAAGGCCGGACCACGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGT < 1:17056914/68‑1 CGGAGCATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAAT < 1:27238604/67‑1 CGGAGCATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAAT < 1:6551473/67‑1 CGGAGCATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAAT < 1:11309458/67‑1 GGAGCATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAAT > 1:7076283/1‑66 GCATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTG < 1:5410554/67‑1 CATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTG > 1:25716559/1‑66 ATGCTCCGGCCTTTTTTATCTCTTTCAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGC < 1:32047106/67‑1 ATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGC < 1:15031480/67‑1 ATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGC < 1:25657064/67‑1 ATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGC < 1:26760819/67‑1 ATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGG < 1:23359470/66‑1 ATGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGG < 1:3421039/66‑1 TGCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTA < 1:13645215/68‑1 GCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAA > 1:8882373/1‑68 GCTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAA > 1:8705733/1‑68 CTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAG > 1:29643708/1‑68 CTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAG > 1:34381329/1‑68 CTCCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTCGCTAAG > 1:4780483/1‑68 CCGGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAA > 1:8659442/1‑68 CCGGCCGTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAA > 1:1013554/1‑68 ggaCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTACCCGTGAAATACTGGCTAAGAAGC < 1:27004469/65‑1 GGCCTTTTTTATCTCTTACAGTAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:36581686/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAACGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:11651806/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:7389302/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:12183303/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:9380381/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:14890839/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:21226076/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:16457765/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:5807279/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:18573172/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:20889139/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:21626888/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:37963790/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:37686918/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:27648074/68‑1 GGCCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGC < 1:33262710/68‑1 CCTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGCC < 1:2513010/67‑1 CTTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGCCTT < 1:25051287/68‑1 TTTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGCCTTT < 1:33528650/68‑1 AAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4470687‑4470776‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggccggagcatgctccggccttTTTTATCTCTTACAGAAATGGTAAAGAAGGCATAACTCCCCGTGAAATACTGGCTAAGAAGCCTTT < CP009273/4470752‑4470687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |