| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4470776 | NA (NA) | 4 (0.010) | 4/64 | NT | NA | intergenic (+33/+23) | yjgN/valS | DUF898 family inner membrane protein/valyl‑tRNA synthetase |
| ? | CP009273 | = 4470752 | NA (NA) | intergenic (+9/+47) | yjgN/valS | DUF898 family inner membrane protein/valyl‑tRNA synthetase | |||||
Only 100 of 594 total aligned reads displayed.
ACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCT > CP009273/4470710‑4470841 | aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc > 1:11052144/1‑68 (MQ=255)aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc > 1:14481400/1‑68 (MQ=255)aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc > 1:12266614/1‑68 (MQ=255)aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc > 1:3907471/1‑68 (MQ=255) ggggTGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt < 1:15024021/68‑1 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCg > 1:7478636/1‑67 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt < 1:19808464/68‑1 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt < 1:33380335/68‑1 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt > 1:36986951/1‑68 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt > 1:17665851/1‑68 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt > 1:6424631/1‑68 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt < 1:19029312/68‑1 (MQ=255) ggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGttt > 1:29243862/1‑68 (MQ=255) ggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGttt > 1:31619152/1‑68 (MQ=255) gAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGttt < 1:36233196/67‑1 (MQ=255) aTGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc > 1:28068380/1‑67 (MQ=255) gCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc > 1:23168160/1‑65 (MQ=255) gCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc > 1:22106197/1‑65 (MQ=255) gCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc > 1:9726197/1‑65 (MQ=255) gCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc > 1:4786749/1‑65 (MQ=255) gCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc > 1:11709908/1‑65 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt < 1:33097340/68‑1 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt > 1:4293596/1‑68 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt < 1:27346276/68‑1 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt < 1:26642683/68‑1 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt < 1:25904948/68‑1 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt > 1:25657027/1‑68 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt > 1:23972870/1‑68 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt > 1:5931118/1‑68 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt < 1:7930724/68‑1 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt > 1:10482566/1‑68 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt < 1:20431820/68‑1 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt < 1:16698431/68‑1 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtg < 1:7314852/67‑1 (MQ=255) ttcttTACCATTTCTTTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgtg < 1:18562234/68‑1 (MQ=255) ttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgtg < 1:14036532/68‑1 (MQ=255) ttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgtg < 1:2987176/68‑1 (MQ=255) ttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgtg < 1:28309524/68‑1 (MQ=255) tcttTACCATTTCTGTAAGATATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:21417053/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:19463461/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:16079438/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:32507734/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:32698622/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:13388110/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:24432521/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGACCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:34904019/68‑1 (MQ=255) cttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGtt > 1:5399969/1‑68 (MQ=255) tACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTg < 1:17986565/68‑1 (MQ=255) tACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTg > 1:13057240/1‑68 (MQ=255) tACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTg < 1:1120176/68‑1 (MQ=255) ccATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAt > 1:25354756/1‑68 (MQ=255) cATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAtt > 1:23580192/1‑68 (MQ=255) aTTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAtt > 1:34369647/1‑67 (MQ=255) aTTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAtt > 1:15769799/1‑67 (MQ=255) cTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAgc < 1:11536477/68‑1 (MQ=255) aaGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCgcgg < 1:5112696/68‑1 (MQ=255) aaGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCgcgg < 1:35958171/68‑1 (MQ=255) agagATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCgcggc > 1:14835712/1‑68 (MQ=255) agagATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCgcggc > 1:36669481/1‑68 (MQ=255) agagATAAAAAAGGCCGGAGCATGCTCCGGCCGTCGTTTTCATCACTGTGTTTTGATTACAGCgcggc > 1:26429287/1‑68 (MQ=255) agaTAAAAAAGGCCGGAGCATGCTCCGGCCTTttttatctcttacagaaatggtaaagaaggcata > 1:27695959‑M1/1‑32 (MQ=255) agaTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa > 1:38207409/1‑68 (MQ=255) agaTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa > 1:31268413/1‑68 (MQ=255) agaTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa > 1:31904516/1‑68 (MQ=255) agaTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa > 1:7010005/1‑68 (MQ=255) agaTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa > 1:2006707/1‑68 (MQ=255) aTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATa > 1:17215509/1‑68 (MQ=255) tAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTTCAGCGCGGCGAt < 1:28904168/66‑1 (MQ=255) tAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATa < 1:5745603/67‑1 (MQ=255) aaaaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACa > 1:35698141/1‑67 (MQ=255) aaaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAg > 1:251562/1‑67 (MQ=255) aaaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAg > 1:22894851/1‑67 (MQ=255) aaaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAg > 1:945869/1‑67 (MQ=255) aaaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGGGTTTTGATTACAGCGCGGCGATACCAg > 1:18288844/1‑67 (MQ=255) aaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAg > 1:20588508/1‑66 (MQ=255) aaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAg > 1:37280692/1‑66 (MQ=255) aaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAg > 1:35364677/1‑66 (MQ=255) aGGCCGGAGCTTGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGAGCGGCGATAAcgg > 1:12155880/1‑63 (MQ=39) ggCCGGAGCATGCTCCGGCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaa > 1:15464505‑M1/1‑22 (MQ=255) cGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCctgctg < 1:33740386/68‑1 (MQ=255) ggAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGt < 1:13721636/68‑1 (MQ=255) ggAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGt < 1:21745782/68‑1 (MQ=255) gCATGCTCCGGCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactg > 1:38627828‑M1/1‑15 (MQ=255) aTGCTCCGGCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactgg < 1:23359470‑M1/66‑54 (MQ=255) gCTCCGGCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaa > 1:9229367‑M1/1‑11 (MQ=255) gCTCCGGCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaa > 1:8882373‑M1/1‑11 (MQ=255) cTCCGGCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaag > 1:29643708‑M1/1‑10 (MQ=255) tCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGt > 1:17392579/1‑68 (MQ=255) ccGGCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaa > 1:20869900‑M1/1‑8 (MQ=255) ccGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtt > 1:17008210/1‑68 (MQ=255) ccGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtt > 1:6602482/1‑68 (MQ=255) ccGGCCGTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaa > 1:1013554‑M1/1‑8 (MQ=255) ggacttttttatctcttacagaaatggtaaagaaggcataactacccgtgaaatactggctaagaagc < 1:27004469‑M1/65‑63 (MQ=255) ggCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaagc < 1:21226076‑M1/68‑63 (MQ=255) ggCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaagc < 1:16457765‑M1/68‑63 (MQ=255) ggCCTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaagc < 1:37686918‑M1/68‑63 (MQ=255) gCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttc > 1:24749853/1‑67 (MQ=255) ccTTttttatctcttacagaaatggtaaagaaggcataactccccgtgaaatactggctaagaagcc < 1:8558418‑M1/67‑64 (MQ=255) ccTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttc > 1:31030317/1‑66 (MQ=255) cTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGtttcgct > 1:12628358/1‑68 (MQ=255) | ACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGCCTGCTGTTCAATCAGTTTCGCT > CP009273/4470710‑4470841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |