| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4470776 | NA (NA) | 4 (0.010) | 4/64 | NT | NA | intergenic (+33/+23) | yjgN/valS | DUF898 family inner membrane protein/valyl‑tRNA synthetase |
| ? | CP009273 | = 4470752 | NA (NA) | intergenic (+9/+47) | yjgN/valS | DUF898 family inner membrane protein/valyl‑tRNA synthetase | |||||
Only 100 of 559 total aligned reads displayed.
ATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGC > CP009273/4470685‑4470819 | aTAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATaaaa > 1:14452463/1‑68 (MQ=255) aaaGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaa < 1:33528650‑M2/68‑3 (MQ=255) gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggcc < 1:27550287‑M2/68‑7 (MQ=255) gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggcc < 1:21626888‑M2/68‑7 (MQ=255) gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggcc < 1:18573172‑M2/68‑7 (MQ=255) gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:25799473‑M1/1‑68 (MQ=255) gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:23665355‑M1/1‑68 (MQ=255) gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:6545531‑M1/1‑68 (MQ=255) gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:12391177‑M1/1‑68 (MQ=255) gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:20810371‑M1/1‑68 (MQ=255) gCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCC > 1:13999494‑M1/1‑68 (MQ=255) cttcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGC < 1:4046048‑M1/66‑1 (MQ=255) ttcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAacggccgg > 1:1013554‑M2/1‑60 (MQ=255) tcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGA > 1:24964476‑M1/1‑68 (MQ=255) tcttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGA < 1:21069414‑M1/68‑1 (MQ=255) cttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAG < 1:13647985‑M1/68‑1 (MQ=255) cttAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAG < 1:17405454‑M1/68‑1 (MQ=255) tAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTGAGAGATAAAAAAGGCCGGAGCA > 1:14491960‑M1/1‑68 (MQ=255) tAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCA > 1:29261448‑M1/1‑68 (MQ=255) aGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggccggagcat > 1:11439156‑M2/1‑55 (MQ=255) gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggccggagcat < 1:23382638‑M2/67‑14 (MQ=255) gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggccggagcat < 1:25657064‑M2/67‑14 (MQ=255) gCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggccggagcat < 1:26760819‑M2/67‑14 (MQ=255) ccAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggccggagcat < 1:3421039‑M2/66‑14 (MQ=255) ccAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT > 1:23049200‑M1/1‑66 (MQ=255) ccAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCAT > 1:37714251‑M1/1‑66 (MQ=255) ccAGTATTTCACGGGGAGTTATGCCTTCTTAACCATTTCTGTAAGAGATAAAAAAGGCCCGAGCAT > 1:15065219‑M1/1‑66 (MQ=255) cAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGC < 1:30062462‑M1/67‑1 (MQ=255) aTTTCACGGGGTGTTATGCCTTCTTTACCTTTTCTGTAAGATATAAATAAGGCCGGAGCATGCTcctg < 1:26164956/68‑3 (MQ=255) aTTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAaaggccggagcatgctcc > 1:7076283‑M2/1‑48 (MQ=255) aTTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGG < 1:33305971‑M1/68‑1 (MQ=255) aTTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCG > 1:19542779‑M1/1‑67 (MQ=255) aTTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCG > 1:28325438‑M1/1‑67 (MQ=255) aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc > 1:9170056/1‑68 (MQ=255) aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc > 1:6148537/1‑68 (MQ=255) aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc < 1:24544724/68‑1 (MQ=255) aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc > 1:35878292/1‑68 (MQ=255) aCGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTc > 1:16341040/1‑68 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt > 1:36986951/1‑68 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt < 1:937495/68‑1 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt < 1:7768716/68‑1 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt < 1:20024375/68‑1 (MQ=255) ggggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt < 1:19808464/68‑1 (MQ=255) ggggAGTTATGCCTTCTTTACCAGTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGt > 1:31568495/1‑68 (MQ=255) ggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGttt > 1:36025352/1‑68 (MQ=255) ggAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGtt < 1:35102648/67‑1 (MQ=255) gAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGttt < 1:12065389/67‑1 (MQ=255) gAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGttt < 1:8430532/67‑1 (MQ=255) gAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGttt < 1:17211008/67‑1 (MQ=255) gAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGttt < 1:26575750/67‑1 (MQ=255) gAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCCTCGtct < 1:8752471/67‑3 (MQ=255) tATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc < 1:38442456/68‑1 (MQ=255) agCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCAc < 1:30658547/67‑1 (MQ=255) gCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc > 1:11709908/1‑65 (MQ=255) gCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc > 1:4786749/1‑65 (MQ=255) gCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc > 1:37130122/1‑65 (MQ=255) gCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTtcatc > 1:23168160/1‑65 (MQ=255) gCCATCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACt > 1:1583920/1‑68 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAaaggccggagcatgctccggccttttttatctctttcag < 1:6596506‑M2/68‑40 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt > 1:5316173/1‑68 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt < 1:17600181/68‑1 (MQ=255) cttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgt < 1:20431820/68‑1 (MQ=255) ttcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACtgtg < 1:34827593/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:4392088/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:13388110/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:5604891/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:32507734/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:13141335/68‑1 (MQ=255) tcttTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTgtgt < 1:16840643/68‑1 (MQ=255) ttACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGtttt > 1:12826900/1‑68 (MQ=255) tACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTg < 1:17986565/68‑1 (MQ=255) tACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTg > 1:11136045/1‑68 (MQ=255) tACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTg < 1:27961475/68‑1 (MQ=255) tACCATTTCTGTAAGAGAAAAAAacggccggagcatgctccggccttttttatctcttacagaaatgg > 1:23982940‑M2/1‑23 (MQ=255) ccATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAt > 1:25354756/1‑68 (MQ=255) ccATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAt > 1:12186806/1‑68 (MQ=255) cATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAtt < 1:9505513/68‑1 (MQ=255) cATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAtt > 1:22588840/1‑68 (MQ=255) aTTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAtt > 1:10565253/1‑67 (MQ=255) aTTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAtt > 1:17003180/1‑67 (MQ=255) aTTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAtt > 1:38926648/1‑67 (MQ=255) aTTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAtt > 1:28997929/1‑67 (MQ=255) tCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACa > 1:16649215/1‑67 (MQ=255) gTAAGATATAAAAACGGCCGGAGCATGCTCCGGCCTTttttatctcttacagaaatggtaaagaaggc < 1:28207820‑M1/68‑32 (MQ=255) aaGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCgcgg < 1:35609981/68‑1 (MQ=255) aaGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCgcgg < 1:27263841/68‑1 (MQ=255) aaGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCgcgg < 1:2971793/68‑1 (MQ=255) aaGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCgcgg < 1:32038179/68‑1 (MQ=255) agagATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCgcggc > 1:14835712/1‑68 (MQ=255) agagATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCgcggc > 1:36669481/1‑68 (MQ=255) agaTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa > 1:31268413/1‑68 (MQ=255) agaTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGa > 1:38207409/1‑68 (MQ=255) aTAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGAATACAGCGCGGCGATa > 1:7468654/1‑68 (MQ=255) tAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGAt < 1:5767634/66‑1 (MQ=255) tAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGAt < 1:32946819/66‑1 (MQ=255) aaaaaaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAAc < 1:15549135/68‑1 (MQ=255) aaaaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACa > 1:25162755/1‑67 (MQ=255) aaaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGc < 1:19166878/68‑1 (MQ=255) aaaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGGGTTTTGATTACAGCGCGGCGATACCAg > 1:18288844/1‑67 (MQ=255) aaaGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTCTGTTTTGATTACAGCGCGGCGATAACAg > 1:21284870/1‑67 (MQ=255) | ATAAAGGCTTCTTAGCCAGTATTTCACGGGGAGTTATGCCTTCTTTACCATTTCTGTAAGAGATAAAAAAGGCCGGAGCATGCTCCGGCCTTCGTTTTCATCACTGTGTTTTGATTACAGCGCGGCGATAACAGC > CP009273/4470685‑4470819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |