BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	519440 =	420 (0.890)	22 (0.050)	9/96	NT	5.5%	coding (724/4281 nt)	rhsD	Rhs family putative polymorphic toxin
*	?	CP009273	519532 =	398 (0.980)	22 (0.050)	9/96	NT	5.5%	coding (816/4281 nt)	rhsD	Rhs family putative polymorphic toxin

Only 100 of 175 total aligned reads displayed.

AGAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/519514‑519440

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCG  >  CP009273/519532‑519597

AGAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑GGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           <  1:16605085/68‑1

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:25031391/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:25332421/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:36585279/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:37873862/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:18035071/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:12053699/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:30334384/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:5233516/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:27918385/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:38523348/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:38676538/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:14153304/1‑67

 GAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACT                                                                           >  1:15918725/1‑67

   AGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCC                                                                        >  1:32864855/1‑68

   AGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCC                                                                        >  1:34158101/1‑68

   AGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCC                                                                         <  1:24697701/67‑1

     ATAGCGACGAGGGGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:28974371/68‑1

     ATAGCGAAGAGGTGCGGGCCTCTTCCGCC‑‑CGCTGCGCCTGCGTGGTCAGCCCCAGCCGGAACTCCCG                                                                       >  1:21409912/1‑67

     ATAGCGAAGAGGTGCGGGCCTCTTCCGCC‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCG                                                                       >  1:30369377/1‑67

     ATAGCGAAGAGGTGCGGGCCTCTTCCGCACGCGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCC                                                                        >  1:26993033/1‑68

     ATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCG                                                                       >  1:29482371/1‑67

     ATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCG                                                                       >  1:16404694/1‑67

     ATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCG                                                                       >  1:13862494/1‑67

     ATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCG                                                                       >  1:13446799/1‑67

      tcGCGAAGATGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:4107167/65‑1

      tcGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:27011674/65‑1

      tcGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:11744545/65‑1

      TAGCGAAGCGGGGCGGGCCTCTTCCGCA‑‑CGCTGCGCCGGCGTGGGCAGCACCAGACGGAACTCCCGC                                                                      <  1:26670926/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGCC                                                                     <  1:10865895/68‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:35179065/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:35047514/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:24938415/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:23756390/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:25915404/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:31094505/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:27558487/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:30169021/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:29643163/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:28395594/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:2853679/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:29438496/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:37953987/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:8098083/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:6581958/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:12749987/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:465460/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:4652418/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:14578373/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:14994108/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:17088635/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:17346196/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:3860579/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:18281997/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:36694889/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:19115593/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:19293386/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:20018788/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:20676734/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:21203890/67‑1

      TAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:22540697/67‑1

      TAGCGAACAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:11552854/67‑1

                        CTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGC                                                                      <  1:20365983/49‑1

                                 A‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGAC                                           >  1:7655646/1‑67

                                     GCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACAC                                         >  1:221652/1‑67

                                             TGCGTGGTCAGCACCAGACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGG                                >  1:23327589/1‑68

                                             TGCGTGGTCAGCACCAGACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGG                                >  1:25725821/1‑68

                                               CGTGGTCAGCACCAGACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGT                               >  1:9296475/1‑67

                                               CGTGGTCAGCACCAGACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGT                               >  1:28007300/1‑67

                                                    TCAGCACCAGACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGCCACACTGCCCGGTACCGAA                         >  1:32678745/1‑68

                                                    TCAGCACCAGACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAA                         >  1:10416593/1‑68

                                                       GCACCAGACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAC                      >  1:8733608/1‑68

                                                         ACCAGACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACG                     >  1:36097954/1‑67

                                                              ACGGAACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCG               >  1:31466660/1‑68

                                                                   ACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGG          >  1:25688807/1‑68

                                                                   ACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGG          >  1:16263850/1‑68

                                                                   ACTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGG          >  1:37279830/1‑68

                                                                     TCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGG          <  1:6083110/66‑1

                                                                     TCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGG          <  1:12745106/66‑1

                                                                     TCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGG          <  1:17627743/66‑1

                                                                     TCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAG           <  1:17609773/65‑1

                                                                      CCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGT       <  1:8360125/68‑1

                                                                      CCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGT       >  1:13007810/1‑68

                                                                      CCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGT       <  1:17852855/68‑1

                                                                        CGCCCTCTCTCAGCCTCAGCGTTCCCCGACCCACTGCCCGGTACCGAATACGGCCCCGACAGGGGTA      >  1:36819141/1‑67

                                                                         GCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATC    <  1:15097283/68‑1

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGCCACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTAGCC   >  1:7933943/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACCCTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:34438520/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:18472451/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:10272674/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:19783845/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:11034236/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:12179139/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:6330857/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:18555719/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:1399488/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:38749589/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:37697971/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCC   >  1:38177726/1‑68

                                                                          CCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAAGGCCCCGACAGGGGTATC    >  1:18149032/1‑67

AGAAGATAGCGAAGAGGTGCGGGCCTCTTCCGCA‑‑CGCTGCGCCTGCGTGGTCAGCACCAGACGGAACTCCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/519514‑519440

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCG  >  CP009273/519532‑519597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.