| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 519440 = | 420 (0.890) | 22 (0.050) | 9/96 | NT | 5.5% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 398 (0.980) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
Only 100 of 532 total aligned reads displayed.
GCTGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCT > CP009273/519373‑519507 | cggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagag > 1:13569607‑M1/67‑67 (MQ=255) ggctacccctgtcggggccgtattcggtaccgggcagtgtggcggggaacgctgaggctgagagaggg > 1:7933943‑M1/66‑68 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:18472451‑M1/66‑68 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:38749589‑M1/66‑68 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:38177726‑M1/66‑68 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:38490358‑M1/66‑68 (MQ=255) aCGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcg > 1:5790285/1‑68 (MQ=255) tacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCg > 1:48803‑M1/63‑67 (MQ=255) gTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcggg > 1:17419110/1‑68 (MQ=255) acccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCggg < 1:25110025‑M1/7‑1 (MQ=255) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAg < 1:14976164/68‑1 (MQ=255) cctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGa < 1:12745106‑M1/8‑1 (MQ=255) cctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGt > 1:16263850‑M1/59‑68 (MQ=255) ccGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt < 1:35016570/68‑1 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:5455547/1‑67 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:29961201/1‑67 (MQ=255) ggCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTc < 1:19262808/68‑1 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:26820412/1‑68 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:31507209/1‑68 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:19556676/1‑68 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGGGACGGACGGTGCCGGGCGGGAGGTcgg > 1:21364251/1‑66 (MQ=37) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGTTGCCGGGCGGGAGTTCCGt < 1:25783767/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:33815729/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:19736102/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:36990946/68‑1 (MQ=255) ggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGt > 1:2762678‑M1/53‑67 (MQ=255) ggCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg > 1:20033823/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:25391007/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:14084198/1‑68 (MQ=255) cgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGt > 1:36097954‑M1/48‑67 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg < 1:22232424/66‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg < 1:15690581/66‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt < 1:10951813/67‑1 (MQ=255) ccgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt < 1:24273096/67‑1 (MQ=255) gccgGTGACCTGGCCGGGGAAATCACCGGCGTGCCGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:17188537/1‑65 (MQ=255) gccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:6711853/1‑65 (MQ=255) ttcggtaccgggcagtgtggcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGa > 1:32678745‑M1/44‑68 (MQ=255) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:17591326/68‑1 (MQ=255) cgGTGACCTGGCCGGCGACATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:15228775/68‑1 (MQ=255) cgGTGACCTGCCCGGGGAACGCCCCGGCGTGACGGCCGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:12968209/68‑1 (MQ=25) cgGTCACCTGGCCGGGGAACGCCCGGGCGTGACGGACGGGGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:24513571/68‑1 (MQ=255) ggTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa > 1:21064549/1‑67 (MQ=255) ggTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa > 1:33555383/1‑67 (MQ=255) gACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCAc > 1:25655590/1‑68 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCCCGc > 1:24912018/1‑68 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACg < 1:12072222/67‑1 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACg < 1:6289777/67‑1 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGc > 1:21771243/1‑68 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGc > 1:15960304/1‑68 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGAGGGAGTTCCGTCTGGTGCTGCCCCCga > 1:4295657/1‑67 (MQ=25) accgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACg > 1:28007300‑M1/38‑67 (MQ=255) ccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCa > 1:23327589‑M1/37‑68 (MQ=255) cTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCa < 1:1130004/68‑1 (MQ=255) cTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCa < 1:34435958/68‑1 (MQ=255) cTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCa < 1:28248955/68‑1 (MQ=255) cTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCa < 1:29061409/68‑1 (MQ=255) tGGCCTGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGCTCACGCAg > 1:7028370/1‑68 (MQ=21) ggCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg < 1:14631193/68‑1 (MQ=255) ggCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg < 1:36280992/68‑1 (MQ=255) ggCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg < 1:10736467/68‑1 (MQ=255) ggCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg < 1:18758424/68‑1 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:16576353/1‑67 (MQ=255) ccGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:17000356/1‑67 (MQ=255) ccGGGGAAATAACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgc > 1:28702751/1‑67 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:13166654/67‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:37232144/67‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCg > 1:2944258/1‑68 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCg > 1:2642337/1‑68 (MQ=255) gAAAGCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:17890306/67‑1 (MQ=255) gAAACCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGGGCTGACCACGCAGGCGCAGc < 1:9550338/67‑1 (MQ=255) gtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt > 1:7655646‑M1/26‑67 (MQ=255) actCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:4617277/65‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCgg < 1:37524024/67‑2 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:13886830/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:3796856/67‑1 (MQ=255) cACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCgg > 1:9864476/1‑68 (MQ=255) cccGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:31201313/67‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTGTGTTGCTGACCACGCAGGCTCAGCGTGCGGa < 1:17776591/68‑1 (MQ=21) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:34131068/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:32116858/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:3945638/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:22670959/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:23928214/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCGGACCACGCAGGCGCAGCGTGCGGa < 1:14322912/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTGCCGTCTGGTGCGGACCTCCCAGGGGCTGCGTGCGGa > 1:7270367/1‑68 (MQ=21) aCCGGCGGGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:35668496/68‑1 (MQ=255) aCCGGCGGGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:848950/68‑1 (MQ=255) ggCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCCGGCGCAGCGTGCGGAaga > 1:10161707/1‑68 (MQ=255) gggacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:8878215/65‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:29326483/67‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:34519930/67‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGc < 1:18275105/68‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGc < 1:30435135/68‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGc < 1:10507782/68‑1 (MQ=255) gacggacgGTGCGGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGccc < 1:12183806/68‑1 (MQ=255) ggacggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGc > 1:821653/1‑67 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACct < 1:27294566/68‑1 (MQ=255) ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc > 1:26018019/1‑66 (MQ=255) ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctc < 1:37797087/68‑1 (MQ=255) gCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTc > 1:18550790/1‑68 (MQ=255) | GCTGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCT > CP009273/519373‑519507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |