| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 519440 = | 420 (0.890) | 22 (0.050) | 9/96 | NT | 5.5% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 398 (0.980) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
Only 100 of 621 total aligned reads displayed.
CCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCC > CP009273/519465‑519599 | ccACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCct < 1:28560519/68‑1 (MQ=255) cACGCTGGCGCAGCGTGCGGAAGAGGCCCGCACCTGTGCGCTATCTTCTTCTGACAGTTCCCGCCctc < 1:34089589/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:35317106/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:36064361/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:31784271/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:29599905/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:16676263/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctc > 1:27328107/1‑67 (MQ=255) gCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctctct < 1:15727910/68‑1 (MQ=255) cAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCtctctc > 1:2114386/1‑68 (MQ=255) GCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcc < 1:24798189‑M1/67‑1 (MQ=255) GCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcc > 1:14005111‑M1/1‑67 (MQ=255) AGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctca < 1:26335419‑M1/68‑1 (MQ=255) AGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctca < 1:36250497‑M1/68‑1 (MQ=255) cGTGCGGAAGCGGCCCGCACCTCTTCGCTAGCTTCTTCTGACAGTT‑CCGCCCTCTCGCAGCCTCAGCg > 1:29939926/1‑68 (MQ=255) CGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCtctctcagcctccgc < 1:37048230‑M1/68‑4 (MQ=255) GTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctcag > 1:24153195‑M1/1‑66 (MQ=255) gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:7322498/68‑1 (MQ=255) gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:8849100/68‑1 (MQ=255) gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:10951133/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:30342859/68‑1 (MQ=255) gAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc > 1:23499357/1‑67 (MQ=255) gAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc > 1:6685017/1‑67 (MQ=255) agagGCCCGCACCTCTTGGCTATCTTGTTCTGACAGTTCCCGCCCTCTCTCCGCCTCAGCGGTGCCCg > 1:32353004/1‑68 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:651713/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:24512564/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:26889292/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:22723508/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:22563402/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:30738577/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:7869021/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:19860358/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:5266371/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:14963916/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:10464116/1‑68 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:4658618/1‑68 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:1770974/1‑68 (MQ=255) ggCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGac > 1:19185667/1‑67 (MQ=255) ggCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGa < 1:37215445/66‑1 (MQ=255) ggCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCGCTCTCAGCCTCAGCGTTCCCCGac > 1:17479954/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:9741981/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:12785327/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:20561945/1‑67 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCGGCCCTCTCTCAGCCTCAGCGTTCCCGGACACACTGc > 1:8630643/1‑67 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACCCCCTGc > 1:22074925/1‑67 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGcc < 1:21331627/68‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:34263391/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:24369680/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:22396445/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:10071537/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:38762765/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:2921801/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:8374427/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:11758907/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:11338481/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:3202849/67‑1 (MQ=255) aCCTCTTCGCTATCTTCATCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGCCCCCCTGc > 1:5771140/1‑67 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:28124821/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:4053868/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:4333406/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:33796330/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:20116546/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:17080688/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:27694876/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:13663099/68‑1 (MQ=255) cgtggtcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt > 1:9296475‑M2/31‑67 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCCGCCTCAGCGTTCCCCGACACACTGCCCGGGAc < 1:21807273/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:26037549/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:23170576/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:25361966/68‑1 (MQ=255) gCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:10281824/1‑68 (MQ=255) tctcttcttctGACACTGCCCGCCCGCTCTCAGCCTCAGCCTTCCCCGACACACTGCCCGGTACCGa < 1:18709233/65‑1 (MQ=255) cttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAc > 1:35772803/1‑68 (MQ=255) cttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAc > 1:13248205/1‑68 (MQ=255) cttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAc > 1:11958462/1‑68 (MQ=255) cttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAc > 1:37756320/1‑68 (MQ=255) cttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAc > 1:31543593/1‑68 (MQ=255) tcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACgg < 1:6119252/68‑1 (MQ=255) tcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACgg < 1:3369209/68‑1 (MQ=255) cttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGc < 1:32781/68‑1 (MQ=255) cttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGc < 1:16456369/68‑1 (MQ=255) tGACTGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:34837564/68‑1 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:952645/68‑1 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:19540687/68‑1 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:31149081/68‑1 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:34545277/68‑1 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGAACCGAATACGGCCCCg < 1:33574605/68‑1 (MQ=255) acggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg > 1:18459892‑M2/16‑68 (MQ=255) ccAGTTCCCGCCCTCTCTCAGCCTCCGCGTTCCCCGACGCACTGCCCGGTACCGAATACGGCGCGGAc > 1:26552912/2‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:36498955/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:15196448/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:8261148/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:12361181/1‑68 (MQ=255) cAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGaa > 1:14654034/1‑55 (MQ=255) actcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAgg > 1:16263850‑M2/11‑68 (MQ=255) tcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCAAATACGGCCCCGACAgggg < 1:25688291‑M2/60‑1 (MQ=255) cgcccTCTCTCAGCCTCAGCGTTCCCCGACCCACTGCCCGGTACCGAATACGGCCCCGACAGGGGTa > 1:36819141‑M2/6‑67 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATcc > 1:38177726‑M2/4‑68 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATcc > 1:38490358‑M2/4‑68 (MQ=255) tctctcAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGcc < 1:33239345/68‑1 (MQ=255) | CCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCC > CP009273/519465‑519599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |