| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1066816 = | 469 (0.990) | 29 (0.070) | 11/98 | NT | 6.5% | coding (406/801 nt) | rutD | putative aminoacrylate hydrolase, reactive intermediate detoxification |
| ? | CP009273 | 1066859 = | 421 (1.020) | coding (363/801 nt) | rutD | putative aminoacrylate hydrolase, reactive intermediate detoxification | |||||
Only 100 of 144 total aligned reads displayed.
TAACGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1066889‑1066816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑a‑‑‑gcggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAATCC > CP009273/1066859‑1066925 TAACGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA < 1:34440829/68‑1TAACGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA < 1:29677851/68‑1TAACGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA < 1:35429117/68‑1 AACGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA > 1:107539/1‑67 ACGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GC < 1:4662922/68‑1 ACGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GC < 1:161585/68‑1 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:32196797/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:24318638/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:203159/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:19049776/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:17863589/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:32690992/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:15871666/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:15270016/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:32127462/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:38798642/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:30049516/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:29883431/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:5904040/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:29406623/1‑68 CGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAAAGATTTCTGTATA‑‑‑GCG > 1:25686033/1‑68 GGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCG > 1:13386660/1‑67 GCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGC > 1:34300/1‑68 GCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGC > 1:14052173/1‑68 CTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGC < 1:16057162/67‑1 CTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGC < 1:12074962/67‑1 TGGCTCCGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGC < 1:16743913/68‑1 TGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGC < 1:18445286/68‑1 TGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGC < 1:24574162/68‑1 TGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGC < 1:22556234/68‑1 TGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGC < 1:8539866/68‑1 TGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGC < 1:34984428/68‑1 TGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGC < 1:4405703/68‑1 TGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGC < 1:39100297/68‑1 TGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGC < 1:3125854/68‑1 TGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGC < 1:36743397/68‑1 CTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGT < 1:20377856/67‑1 ATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCG < 1:34464685/68‑1 ATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCG < 1:2928435/68‑1 ATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGC < 1:33776691/67‑1 ATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGC < 1:31012880/67‑1 CGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCGTTTAT < 1:8186515/68‑1 GCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCGTTTATT < 1:9278158/68‑1 GCCCATACGCGCCGCTGTTTTCAGGCTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCGTTTATT < 1:32787916/68‑1 CATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCGTTTATTCGT < 1:34042177/68‑1 CGCTGTTTTCCGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCG < 1:6954973/68‑1 CGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCG < 1:34957439/68‑1 CGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCG < 1:16597542/68‑1 CGCTGTTTTCAGGTGCGCGAACGATTACTCTATA‑‑‑GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCG < 1:38953173/68‑1 CGCTGTTTTCAGGTCCGCGACCGATTACTGTATC‑‑‑GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCG < 1:27052369/68‑1 CGCTGTTATCAGGTTCGCGAACGATAACTGTATA‑‑‑GCCGCGCGTATGGGCGTTTATTCGTAGCCAGCCG < 1:36681573/68‑1 TTTCCGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAAC < 1:35676983/67‑1 TCAGGTTCGCGAACGATTACTGTATAGCGGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAAC < 1:13393329/68‑1 TTCGCGAACGATTACTGTATA‑‑‑GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGA < 1:5962946/65‑1 gccAACGATTACTGTATC‑‑‑CCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGC < 1:23744144/64‑1 cAACGATTCCTGTCTC‑‑‑CCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACA < 1:38470088/67‑1 cAACGATTACTGTATA‑‑‑CCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACA < 1:1025931/67‑1 cCGATTACTGAATC‑‑‑GCGGCGCGTATGGGCGTTAATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGT < 1:10353256/67‑1 ACGATCACTGTATC‑‑‑GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGT < 1:21321073/68‑1 ACGATCACTGCATA‑‑‑GCGCCGCGTATGGGCGTTAATTCGAAGCCAGCCGTTAACGCTGATCAGCACAGT < 1:15185043/68‑1 GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGCTCAGCACAGTTACCGACGCGGGAT > 1:18872590/1‑68 GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGAT > 1:36132475/1‑68 GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGAT > 1:9611012/1‑68 GCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGAT > 1:3482809/1‑68 CGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACA < 1:12358148/51‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAA < 1:30757912/68‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAA > 1:15511545/1‑68 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAA > 1:1176600/1‑68 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:39118522/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:13875927/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:4584666/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:15223708/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:11501653/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:8932046/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:9932052/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:35981944/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:30656661/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:19070989/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:2028887/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:29356834/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:34758195/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:2911555/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:28295224/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:26799324/64‑1 GGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCGGACCAGCACAGTTACCGACGCGGG < 1:6839614/64‑1 GGCGCGTATGGGCGTTTAATCGTAGCCAGACGTTAACGCTGATCAGCACAGTTACCGACGCGGG < 1:13277498/64‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAa < 1:7343542/67‑2 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:17690250/67‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:10195061/67‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:29159066/67‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:10992350/67‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:27845153/67‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:12827648/67‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:12942669/67‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:21256835/67‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:15101397/67‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:37132994/67‑1 CGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAT < 1:36316958/67‑1 GCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAATCC > 1:22537100/1‑68 GCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAATC < 1:23888413/67‑1 TAACGGCTGGCTACGAATAAACGCCCATACGCGCCGCTGTTTTCAGGTTCGCGAACGATTACTGTATA‑‑‑GCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1066889‑1066816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑a‑‑‑gcggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAATCC > CP009273/1066859‑1066925 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |