New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1066816 =469 (0.990)29 (0.070) 11/98 NT 6.5% coding (406/801 nt) rutD putative aminoacrylate hydrolase, reactive intermediate detoxification
?CP009273 1066859 = 421 (1.020)coding (363/801 nt) rutD putative aminoacrylate hydrolase, reactive intermediate detoxification

Only 100 of 668 total aligned reads displayed.

GCGCTTCCACCCATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAATCC  >  CP009273/1066792‑1066925
                                                                   |                                                                  
tggctacgaataaacgcccatacgcgccgctgttttcaggttcgcgaacgattactgtatagcggcgc                                                                    <  1:24574162‑M2/1‑1 (MQ=255)
tggctacgaataaacgcccatacgcgccgctgttttcaggttcgcgaacgattactgtatagcggcgc                                                                    <  1:8539866‑M2/1‑1 (MQ=255)
tggctacgaataaacgcccatacgcgccgctgttttcaggttcgcgaacgattactgtatagcggcgc                                                                    <  1:36743397‑M2/1‑1 (MQ=255)
tggctacgaataaacgcccatacgcgccgctgttttcaggttcgcgaacgattactgtatagcggcgc                                                                    <  1:18445286‑M2/1‑1 (MQ=255)
gcgcTTCCACCCATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGgcgc                                                                    <  1:31148798/68‑1 (MQ=255)
  gcTTCCTCCCATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGt                                                                  <  1:30906600/68‑1 (MQ=255)
  gcTTCCACCCATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGt                                                                  <  1:1188133/68‑1 (MQ=255)
  gcTTCCACCCATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGt                                                                  >  1:14346208/1‑68 (MQ=255)
  gcTTCCACCCATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGt                                                                  >  1:4435128/1‑68 (MQ=255)
    ttCCACCCATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTAt                                                                >  1:29832167/1‑68 (MQ=255)
      ccACCCATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATgg                                                              <  1:24927541/68‑1 (MQ=255)
        aCCCATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGc                                                            >  1:13315838/1‑68 (MQ=255)
         cccATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCg                                                           >  1:28558099/1‑68 (MQ=255)
         cccATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCg                                                           <  1:11248661/68‑1 (MQ=255)
         ataaacccccatacgcgccgctgttttcaggttcgcgaacgattactgtatagcggcgCGTATGGGCg                                                           <  1:21964154‑M2/10‑1 (MQ=255)
          ccATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGt                                                          >  1:32496025/1‑68 (MQ=255)
           cATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGtt                                                         <  1:20385314/68‑1 (MQ=255)
              gCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTAt                                                      >  1:25674326/1‑68 (MQ=255)
               gcccatacgcgccgctggtttcaggtgcgcgaacgattactgtatagcggcgCGTATGGGCGTTTAtt                                                     <  1:2916703‑M2/16‑1 (MQ=255)
               ccTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTAtt                                                     >  1:4148544/1‑68 (MQ=255)
               ccTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTAt                                                      >  1:31847687/1‑67 (MQ=255)
               ccTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTAt                                                      >  1:5475125/1‑67 (MQ=255)
                cTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTAtt                                                     <  1:15938297/67‑1 (MQ=255)
                cTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTAtt                                                     <  1:5175659/67‑1 (MQ=255)
                cTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTc                                                    >  1:9105413/1‑68 (MQ=255)
                   cgcgcCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATTGGCGTTTATTCGTa                                                 >  1:20924728/1‑68 (MQ=255)
                    gcgcCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTa                                                 >  1:10019531/1‑67 (MQ=255)
                    gcgcCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTa                                                 >  1:38095136/1‑67 (MQ=255)
                    gcgcCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTa                                                 >  1:11666970/1‑67 (MQ=255)
                    gcgcCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTa                                                 >  1:10298399/1‑67 (MQ=255)
                    gcgcCGCCGCTATACAGTAATCGTTCGCGAAAATGAAAACAGCGGCGCGTATGGTCGTTTATTCGTa                                                 >  1:19663065/1‑67 (MQ=255)
                     acgCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTag                                                <  1:29042466‑M1/64‑1 (MQ=255)
                      gccgccgcTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTagcc                                              >  1:37421814/1‑68 (MQ=255)
                      cgCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTagcc                                              <  1:24189584‑M1/66‑1 (MQ=255)
                       gCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTagcca                                             <  1:22556234‑M1/67‑1 (MQ=255)
                         GCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTagccagc                                           >  1:14052173‑M1/1‑68 (MQ=255)
                         GCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTagccag                                            <  1:35034843‑M1/67‑1 (MQ=255)
                           cgctgttttccggttcgcgaacgattactgtatagcggcgCGTATGGGCGTTTATTCGTAGCCAGCCg                                         <  1:6954973‑M2/28‑1 (MQ=255)
                           CGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCg                                         >  1:32127462‑M1/1‑68 (MQ=255)
                           CGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCg                                         >  1:32690992‑M1/1‑68 (MQ=255)
                           CGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCg                                         >  1:13705143‑M1/1‑68 (MQ=255)
                            GCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGt                                        <  1:4662922‑M1/68‑1 (MQ=255)
                            GCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGt                                        <  1:161585‑M1/68‑1 (MQ=255)
                                taCAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAAc                                    <  1:26085442/68‑1 (MQ=255)
                                taCAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAAc                                    <  1:37779759/68‑1 (MQ=255)
                                 tttccggttcgcgaacgattactgtatagcggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAAc                                    <  1:35676983‑M2/33‑1 (MQ=255)
                                 gttcaggtccgcgaacgattactgtataccggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAAc                                    <  1:10555435‑M2/33‑1 (MQ=255)
                                 aCAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTacc                                    >  1:22277585/1‑65 (MQ=255)
                                 aCAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAAc                                    >  1:35388821/1‑67 (MQ=255)
                                 aCAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAAc                                    >  1:5960844/1‑67 (MQ=255)
                                 aCAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAAc                                    >  1:36960439/1‑67 (MQ=255)
                                    gTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGTCGTTTATTCGTAGCCAGCCGTTAACGCTg                                >  1:37317547/1‑68 (MQ=255)
                                    gTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCtc                                >  1:36513210/1‑67 (MQ=255)
                                    gTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTg                                >  1:29673816/1‑68 (MQ=255)
                                    gTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTg                                >  1:21243110/1‑68 (MQ=255)
                                    gTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTg                                >  1:16963378/1‑68 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAACCAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               >  1:7681330/1‑67 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCt                                 <  1:7357626/65‑1 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               >  1:1293382/1‑67 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               >  1:34097093/1‑67 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               >  1:34428177/1‑67 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               <  1:36086524/67‑1 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               >  1:3048459/1‑67 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               >  1:21393739/1‑67 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               <  1:30072448/67‑1 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               >  1:17878014/1‑67 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               >  1:8067365/1‑67 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               >  1:26480336/1‑67 (MQ=255)
                                      aaTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGa                               >  1:2020110/1‑67 (MQ=255)
                                       aTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATc                             <  1:21747816/68‑1 (MQ=255)
                                       aTCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATc                             <  1:29414605/68‑1 (MQ=255)
                                        tCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCa                            <  1:23603038/68‑1 (MQ=255)
                                         cGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCa                            >  1:17369938/1‑67 (MQ=255)
                                         cGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCa                            >  1:23256810/1‑67 (MQ=255)
                                         cGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCa                            >  1:22989841/1‑67 (MQ=255)
                                         cGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCa                            >  1:22636714/1‑67 (MQ=255)
                                          gTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGc                          <  1:16610134/68‑1 (MQ=255)
                                           ttCGCGAACCTGAAAACAGCGGCCCGTATGGGCGTTTATTCGTAGCCAGCCGATAACGCTGATCAGc                          >  1:38979012/1‑67 (MQ=255)
                                            tCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGcac                        <  1:18267724/68‑1 (MQ=255)
                                            tCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGca                         <  1:33849763/67‑1 (MQ=255)
                                             cgcgAACCTGAACACAGCTGCGCGTATGGGCGGTTATTCGTAGCCAGCCGTTAACGCTGATCAGcaca                       <  1:38620160/68‑1 (MQ=255)
                                             cgcgAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGcaca                       <  1:15531094/68‑1 (MQ=255)
                                                gAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGtt                    <  1:27159164/68‑1 (MQ=255)
                                                gAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGt                     <  1:34654161/67‑1 (MQ=255)
                                                      gAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGAc              <  1:31450988/68‑1 (MQ=255)
                                                      gAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCACCACAGTTACCGAc              <  1:8764922/68‑1 (MQ=255)
                                                        aaaCAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGAcgc            >  1:6421844/1‑68 (MQ=255)
                                                        aaaCAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACAGAcgc            >  1:12108119/1‑68 (MQ=255)
                                                         aaCAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGAcgcg           <  1:12657031/68‑1 (MQ=255)
                                                         aaCAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGAcgcg           <  1:6741811/68‑1 (MQ=255)
                                                          aCAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCgg          <  1:33447107/68‑1 (MQ=255)
                                                          aCAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCgg          >  1:32980464/1‑68 (MQ=255)
                                                          aCAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCgg          <  1:2699512/68‑1 (MQ=255)
                                                             gcggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGAt       >  1:9611012‑M2/7‑68 (MQ=255)
                                                               ggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCggg         <  1:11017693‑M2/60‑1 (MQ=255)
                                                               ggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCggg         <  1:13875927‑M2/60‑1 (MQ=255)
                                                               ggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCggg         <  1:19070989‑M2/60‑1 (MQ=255)
                                                               ggcgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCggg         <  1:34887956‑M2/60‑1 (MQ=255)
                                                                 cgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAt    <  1:27845153‑M2/65‑1 (MQ=255)
                                                                 cgCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAAt    <  1:15101397‑M2/65‑1 (MQ=255)
                                                                   |                                                                  
GCGCTTCCACCCATGCCTGCGCGCCGCCGCTATACAGTAATCGTTCGCGAACCTGAAAACAGCGGCGCGTATGGGCGTTTATTCGTAGCCAGCCGTTAACGCTGATCAGCACAGTTACCGACGCGGGATAATCC  >  CP009273/1066792‑1066925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.