| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1171846 | 359 (0.760) | 17 (0.040) | 8/96 | NT | 5.6% | coding (964/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein |
| ? | CP009273 | = 1171942 | 264 (0.650) | coding (1060/1200 nt) | lolC | lipoprotein‑releasing system transmembrane protein | |||||
AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1171773‑1171846‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccgCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCCA < CP009273/1171942‑1171878 AGCGATCCTGCAAACGCATGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGTGGCCA > 1:18128057/1‑68AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:26599377/1‑68AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:4976331/1‑68AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:24992412/1‑68AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCA > 1:13886758/1‑68 CGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:24178715/1‑68 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCACGGGGCCAGC < 1:36063314/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:13287069/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:184525/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:2565502/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:1630080/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:15974903/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:19587588/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:25520131/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:29661003/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:20904218/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:20934299/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:32172415/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:22320758/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:34923278/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:23771654/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC > 1:405139/1‑67 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:4120185/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:507173/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:671292/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGC < 1:22874937/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAG < 1:1041999/66‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAG < 1:17648530/66‑1 GATCCTGCAAACGCAAGGCTTAACTCCGCGACAAAGCATGATGGGCTTTATGGTGCCAGGGGCCAGC < 1:27016889/67‑1 GATCCTGCAAACGCAAGGCTTAACTCCCCGACAAATCATGATGGTCTGTATGGTGCAAGGGGCCAGC > 1:32021652/1‑67 ATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCG > 1:3438782/1‑67 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:27445204/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:28326127/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:29898213/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:30948562/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:32601628/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:37093224/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:25480405/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:15940998/1‑68 TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCC > 1:17046174/1‑68 CCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCG > 1:19399597/1‑68 ACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCC > 1:9098560/1‑68 ATGGTCTTTATGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATT > 1:37357667/1‑68 ATGGTGCAAGGGGCCAGCGCCGCGCCTTCTAGCAGGCCGCCGAGTTTCGGGATCAGATTATTTAACTG > 1:30638304/1‑68 ATGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTG > 1:36884558/1‑68 ATGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTG > 1:15752727/1‑68 TGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGCCGCCGATTATCGGCATCAGATTATTTAACTG > 1:36574819/1‑67 TGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGGAGCAGATTAGTTAACTG > 1:31867613/1‑67 TGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCTTCAGATTATTTAACTGG > 1:24626591/1‑68 TGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTG > 1:37614392/1‑67 TGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTG > 1:14959494/1‑67 TGGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGAGTATCGGCATCAGATTATTTAACTG > 1:34348549/1‑67 GGTGCAAGGGGCCAGCGCCGCGCGATCAAGCAGGACGCCGATTATCGGCGTCAGAGTATTTAACTG > 1:11728494/1‑66 GGTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTTTTTAACTG > 1:12803544/1‑66 GTGCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTTACTG > 1:19988987/1‑65 GCAAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGCTTATTTTACTGGCTG > 1:10801774/1‑67 AAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCA > 1:1380028/1‑68 AAGGGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCA > 1:26153458/1‑68 GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC > 1:37816109/1‑68 GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC > 1:11088887/1‑68 GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC > 1:30215378/1‑68 GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC > 1:25004184/1‑68 GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC > 1:7086271/1‑68 GGGCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGC > 1:22509793/1‑68 GCCAGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAG > 1:34796045/1‑68 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCCGGGC > 1:23264781/1‑68 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGC > 1:11010506/1‑68 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGC > 1:22580255/1‑68 AGCGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGC > 1:10963688/1‑68 CGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCG > 1:33027323/1‑67 CGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCG > 1:62348/1‑67 CGCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCG > 1:1187776/1‑67 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:38837430/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:38262937/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:32228148/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:11697887/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:21528430/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:2134797/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:25224042/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:10372765/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:14800231/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:30182274/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:31067402/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:13767326/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCC > 1:11580680/1‑68 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGC < 1:11218722/67‑1 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGC < 1:8188618/67‑1 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGC < 1:9142389/67‑1 GCCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCGGGCAAGCAGGGCGC < 1:30948289/67‑1 CCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCCA > 1:16472970/1‑68 CCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCCA > 1:11936964/1‑68 CCGCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCCA > 1:9953363/1‑68 AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1171773‑1171846‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccgCGCCATCAAGCAGGACGCCGATTATCGGCATCAGATTATTTAACTGGCTGGCAAGCAGGGCGCCA < CP009273/1171942‑1171878 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |