New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2707629 =	NA (NA)	9 (0.020) +TTC	3/106	NT	NA	intergenic (+40/+169)	srmB/yfiE	ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator
	?	CP009273	= 3323920	NA (NA)					intergenic (+165/+21)	dacB/obgE	D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair

CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2707674‑2707629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGCCTGATGCGCTACGCTTA  <  CP009273/3323920‑3323898                                               |||                        tCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTAC       <  1:11974844/66‑1 tCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTAC       <  1:18910523/66‑1 tCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTAC       <  1:31097432/66‑1 tCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTAC       <  1:35083326/66‑1   ACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTACGCT    <  1:21096130/68‑1     GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTACGCTTA  <  1:38550087/68‑1     GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCGCTACGCTTA  <  1:6987801/68‑1     GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGACGCGCTACGCTTA  <  1:1558866/68‑1      TAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGC                   >  1:33644792/1‑50                                               |||                        CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2707674‑2707629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGCCTGATGCGCTACGCTTA  <  CP009273/3323920‑3323898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.