| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2707629 = | NA (NA) | 9 (0.020) +TTC |
3/106 | NT | NA | intergenic (+40/+169) | srmB/yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| ? | CP009273 | = 3323920 | NA (NA) | intergenic (+165/+21) | dacB/obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair | |||||
Only 100 of 661 total aligned reads displayed.
AAAATCGTGCAAATTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCC > CP009273/3323853‑3323987 | aTCGTGCAAATTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTg > 1:10093160/1‑68 (MQ=255) aTCGTGCAAATTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTg > 1:20990451/1‑68 (MQ=255) cGTGCAAATTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGc < 1:964955/68‑1 (MQ=255) gCAAATTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGtt < 1:8073157/68‑1 (MQ=255) gCAAATTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGtt < 1:33085294/68‑1 (MQ=255) gCAAATTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGt < 1:8837154/67‑1 (MQ=255) aaaTTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTa < 1:3089718/68‑1 (MQ=255) aaaTTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTa < 1:27857818/68‑1 (MQ=255) aaaTTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTa < 1:13603700/68‑1 (MQ=255) aaaTTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTa < 1:17523699/68‑1 (MQ=255) aTTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTatc < 1:38267298/68‑1 (MQ=255) ttCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTatca > 1:10829814/1‑68 (MQ=255) ttCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTatca > 1:2315760/1‑68 (MQ=255) cAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTatcatc < 1:35949263/68‑1 (MQ=255) cAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTatcatc < 1:31903551/68‑1 (MQ=255) cAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTatcatc < 1:27028869/68‑1 (MQ=255) cATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGt > 1:5017953/1‑68 (MQ=255) cATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGt > 1:22242538/1‑68 (MQ=255) cATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGt < 1:25307038/68‑1 (MQ=255) cATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGt > 1:757347/1‑68 (MQ=255) cATAATGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGt < 1:34217753/68‑1 (MQ=255) atatTGCAATTGTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTg > 1:26052579/1‑68 (MQ=255) atatTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTg < 1:32515349/68‑1 (MQ=255) atatTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTg > 1:17001241/1‑68 (MQ=255) atatTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTg > 1:22460571/1‑68 (MQ=255) atatTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTg > 1:26723421/1‑68 (MQ=255) atatTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTg > 1:5720267/1‑68 (MQ=255) tatTGCAATTCTCTTGTTGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGa < 1:4657902/68‑1 (MQ=255) tatTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGa < 1:12519315/68‑1 (MQ=255) tatTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGa < 1:31579297/68‑1 (MQ=255) tatTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGa < 1:30033613/68‑1 (MQ=255) tatTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGa < 1:8545088/68‑1 (MQ=255) tatTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGa < 1:118126/68‑1 (MQ=255) atTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGAt < 1:3467438/68‑1 (MQ=255) gCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTa > 1:28133732/1‑67 (MQ=255) gCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTa > 1:18414948/1‑67 (MQ=255) gCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTa > 1:7094804/1‑67 (MQ=255) aaTTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAAc > 1:9040815/1‑67 (MQ=255) aaTTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAAc > 1:13396037/1‑67 (MQ=255) aaTTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAAc > 1:19881355/1‑67 (MQ=255) aaTTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAAc > 1:30359991/1‑67 (MQ=255) aTTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACga > 1:20592992/1‑67 (MQ=255) aTTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGc < 1:1828245/68‑1 (MQ=255) tctcTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGTCGTTTATAATCAGTGATTATCGCtt > 1:2487189/1‑68 (MQ=21) tctcTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCtt > 1:2182533/1‑68 (MQ=255) tctcTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCtt > 1:2448281/1‑68 (MQ=255) tctcTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCtt > 1:2139115/1‑68 (MQ=255) tctcTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCtt > 1:7802772/1‑68 (MQ=255) ctctTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTg < 1:1385108/68‑1 (MQ=255) ctTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTa > 1:19045125/1‑68 (MQ=255) ctTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTa < 1:28428993/68‑1 (MQ=255) tGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTaaa < 1:2051227/68‑1 (MQ=255) tGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTaaa < 1:2940477/68‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATg > 1:16407375/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:15046362/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:12123328/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:29004723/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:17261595/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:19229438/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:24333446/1‑68 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:14610271/1‑66 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:3986377/1‑66 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:36576264/1‑66 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:35033810/1‑66 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGa > 1:23953261/1‑66 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAAc < 1:5880063/67‑1 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAAc > 1:37661522/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCTGATgaacaaacgcaaaactgcctgatgcgctacgcttatcaggcctac < 1:38550087‑M2/68‑46 (MQ=255) tAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAAc > 1:11545919/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAAc > 1:15620217/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAAc > 1:37352091/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAAc > 1:31227693/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAAc > 1:26343166/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAAc > 1:25826643/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAAc > 1:3236009/1‑67 (MQ=255) tAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACg < 1:33279495/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACg < 1:11974173/68‑1 (MQ=255) aaGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACg > 1:16903547/1‑67 (MQ=255) aaGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGc < 1:36927708/68‑1 (MQ=255) aGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACg > 1:38854874/1‑66 (MQ=255) cGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCct > 1:23573164/1‑67 (MQ=255) gTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCct > 1:24775798/1‑66 (MQ=255) gTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCct > 1:4347939/1‑66 (MQ=255) gTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCct > 1:22797680/1‑66 (MQ=255) gTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCct < 1:18767562/66‑1 (MQ=255) gTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCct > 1:35658719/1‑66 (MQ=255) gTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCct > 1:644736/1‑66 (MQ=255) gcATCAGGCTGATTTGGGGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTtcg > 1:19525298/1‑67 (MQ=255) gcATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTtcgt < 1:16044649/68‑1 (MQ=255) gcATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTtcgt < 1:29652030/68‑1 (MQ=255) gcATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTtcgt < 1:34073282/68‑1 (MQ=255) gcATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTtcg > 1:14362745/1‑67 (MQ=255) gcATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTtcg > 1:5338536/1‑67 (MQ=255) gcATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTtcg > 1:38024021/1‑67 (MQ=255) gcATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTtcg > 1:27261476/1‑67 (MQ=255) gcATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTtcg > 1:13122997/1‑67 (MQ=255) gcATCAGGCTGATTTGGCGTTTATCATCAGTGATTAAAGCTTGTAAATGAACTCAACGCCTTCTtcg > 1:6739612/1‑67 (MQ=255) tCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTtcgtcg > 1:18008510/1‑67 (MQ=255) gCTGATgaacaaacgcaaaactgcctgatgcgctacgcttatcaggccta > 1:33644792‑M2/1‑6 (MQ=255) gATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTc < 1:12847520/68‑1 (MQ=255) | AAAATCGTGCAAATTCAACATATTGCAATTCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCTGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCC > CP009273/3323853‑3323987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |