| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3208309 | NA (NA) | 5 (0.010) | 4/92 | NT | NA | intergenic (+62/+17) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| ? | CP009273 | = 3208314 | NA (NA) | intergenic (+67/+12) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase | |||||
Only 100 of 128 total aligned reads displayed.
TTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3208233‑3208309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacgccaccGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACCGA < CP009273/3208314‑3208248 TTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACA > 1:3211013/1‑68TTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACA > 1:20013712/1‑68TTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACA > 1:23915068/1‑68TTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACA > 1:12487745/1‑68 TCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGAACCCAG‑‑CACTAGGCCCTCTGCACA < 1:31183359/67‑1 CCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAA < 1:11454699/68‑1 CCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAA > 1:37505121/1‑67 CCTGGACGATAAATCGGTACGCCGGATCAGGCGTTACGCCCCACCCGG‑‑CACTAGGCCCTCTGCACAA > 1:23972438/1‑67 CTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAAC < 1:24190496/68‑1 CTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAAC < 1:32381793/68‑1 CTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAAC > 1:30808961/1‑68 TGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACG < 1:11709626/68‑1 TGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACG < 1:19145250/68‑1 GGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACG > 1:35702946/1‑67 GGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACG > 1:4491879/1‑67 GGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACG > 1:18642051/1‑67 GGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACG > 1:4795665/1‑67 GGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACG > 1:2075674/1‑67 GGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACG > 1:25911602/1‑67 GGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACG > 1:12755420/1‑67 GACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACACTAGGCCCTCTGCACAAAC > 1:10615586/1‑67 GACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:26087374/1‑68 GACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:39077470/1‑68 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:34819509/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC < 1:34857805/67‑1 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:25412273/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:25850653/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC < 1:26620021/67‑1 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:26818366/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:27445074/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:29020091/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:36854256/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:20578431/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC < 1:12395192/67‑1 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:600376/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:12572244/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:4803157/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCC > 1:38295390/1‑67 ACGATTAATCGGTAGGCCGGATCAGGCCTTACGCCGCACCCGG‑‑CACTAGGCACTCAGCACAAACGCC > 1:19421474/1‑67 CGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCCA > 1:24766658/1‑67 GATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCCACC < 1:30681502/68‑1 GATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCCACC < 1:17466995/68‑1 GATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCCACC < 1:12436954/68‑1 GATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCCACC < 1:17424757/68‑1 GATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCCACC < 1:8703357/68‑1 G‑‑CACTAGGCCCTCTGCACAAACGCCACCGAAAAGGTGGGGTTTGTGCAGAGGGCCTAGTGCCGGGTGC > 1:16523346/1‑68 CACTAGGCCCTCTGCACAAACGCCACCGAAAAGGTGGCGGTTGTGCAGAGGGCCTAGTGCCGGGTGCG > 1:37332132/1‑68 GCCCTCTGCACAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTA > 1:34237962/1‑67 GCCCTCTGCACAAACGCCACCGAAAAGGTGGCGGTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTA > 1:7602107/1‑67 CCCTCTGCACAAACGCCACCGAAAAGGGGGCGGTTGTGCAGCGGGCCTAGTGCCGGGTGCGGCGTAAC > 1:21909474/1‑68 AACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG < 1:5598950/68‑1 AACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG < 1:29081888/68‑1 AACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG < 1:39042352/68‑1 AACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCG > 1:18804662/1‑67 AACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCG > 1:10421122/1‑67 cCGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGC < 1:24707202/67‑1 ACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGC < 1:24231897/68‑1 ACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG > 1:5687115/1‑67 ACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG > 1:6418745/1‑67 ACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG > 1:26261518/1‑67 ACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG > 1:31625483/1‑67 ACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG > 1:9804408/1‑67 ACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG > 1:29184440/1‑67 ACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG > 1:17847484/1‑67 ACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG > 1:24260053/1‑67 CGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG > 1:10211727/1‑66 CGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG > 1:17912417/1‑66 GCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCT < 1:10396232/68‑1 GCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCT < 1:23595905/68‑1 GCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCT < 1:35752306/68‑1 GCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCT < 1:5574378/68‑1 GCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCT < 1:518299/68‑1 CACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTAC < 1:8977499/68‑1 CACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTAC < 1:8275749/68‑1 CACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTAC < 1:37714293/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTGACGCCTGATCCGGCCTACC < 1:6927356/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:32966/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:30882164/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:11618051/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:7080173/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:13745483/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:6069748/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:15190996/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:18794568/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:4113243/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC > 1:1012011/1‑68 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:19219364/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:34082942/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:20240599/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:20988341/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:22242707/68‑1 ACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACC < 1:34868261/68‑1 CCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACCG > 1:28648466/1‑68 CCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACCG < 1:16434745/68‑1 CCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACCG < 1:5714716/68‑1 CCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACCG < 1:35202600/68‑1 CGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACCGA < 1:25252392/68‑1 CGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACCGA < 1:2307843/68‑1 CGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACCGA < 1:19544671/68‑1 CGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACG < 1:16693839/50‑1 TTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGG‑‑CACTAGGCCCTCTGCACAAACGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3208233‑3208309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacgccaccGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCCTACCGA < CP009273/3208314‑3208248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |