| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3208309 | NA (NA) | 5 (0.010) | 4/92 | NT | NA | intergenic (+62/+17) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| ? | CP009273 | = 3208314 | NA (NA) | intergenic (+67/+12) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase | |||||
Only 100 of 511 total aligned reads displayed.
TCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTT > CP009273/3208248‑3208381 | ggTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggt > 1:1012011‑M2/1‑65 (MQ=255) ggTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggt < 1:34082942‑M2/68‑4 (MQ=255) ggTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggt < 1:34868261‑M2/68‑4 (MQ=255) ggTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggt < 1:19219364‑M2/68‑4 (MQ=255) ggTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggt < 1:7080173‑M2/68‑4 (MQ=255) aGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggtggc < 1:29378925‑M2/68‑7 (MQ=255) aGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggtggc < 1:24295618‑M2/68‑7 (MQ=255) aGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggtggc < 1:23595905‑M2/68‑7 (MQ=255) ccGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggtggcgt > 1:29184440‑M2/1‑59 (MQ=255) ccGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggtggcgt > 1:5687115‑M2/1‑59 (MQ=255) aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGttttt < 1:1086830/67‑1 (MQ=255) aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGttttt < 1:36012307/67‑1 (MQ=255) tCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggtggcgtttgtgc > 1:34391815‑M2/1‑54 (MQ=255) tCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTa > 1:14446675/1‑68 (MQ=255) tCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTa > 1:20273460/1‑68 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGGGTTTTTTATCGc > 1:33843033/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCg < 1:12033633/66‑1 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:29656967/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:15173123/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:11305895/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:21147422/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:20464916/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc < 1:8615490/67‑1 (MQ=255) gTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGcc < 1:14030212/67‑1 (MQ=255) gTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGcc < 1:18686716/67‑1 (MQ=255) tACGCCGCACCCGGCACTAGGCCCTCTGCACAACCGCCACCTTTTCggtggcgtttgtgcagagggc > 1:7602107‑M2/1‑46 (MQ=255) aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACg < 1:32906331/68‑1 (MQ=255) aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACg < 1:9133721/68‑1 (MQ=255) cgccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGc > 1:16441390/1‑68 (MQ=255) cgccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGc > 1:21843427/1‑68 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGc > 1:38522251/1‑67 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGc > 1:6685591/1‑67 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGc > 1:4810208/1‑67 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCa < 1:8116607/68‑1 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCa > 1:29861306/1‑68 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCa < 1:14794895/68‑1 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCa < 1:6040768/68‑1 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCa < 1:6388780/68‑1 (MQ=255) cgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACt < 1:10440636/68‑1 (MQ=255) cgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACt < 1:26464640/68‑1 (MQ=255) gcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACt > 1:21641238/1‑67 (MQ=255) gcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTa < 1:36453660/68‑1 (MQ=255) gcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTa < 1:31500583/68‑1 (MQ=255) aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc > 1:26728279/1‑68 (MQ=255) aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAc < 1:22158485/67‑1 (MQ=255) aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAc < 1:28491698/67‑1 (MQ=255) aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAc < 1:25770250/67‑1 (MQ=255) aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAc < 1:20095230/67‑1 (MQ=255) ggCACTAGGCCCTCTGCACAAACTCCACCTTTTCGGTGGCGTTTTTTTTCGCCCACGCACTACCAgcg < 1:37268606/68‑1 (MQ=255) gCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcg > 1:1589768/1‑67 (MQ=255) cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcg > 1:16698237/1‑66 (MQ=255) cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGGGGCGTTTTTTATCGCCCACGCACTACCAgcgc < 1:1958391/67‑1 (MQ=255) aCTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcg > 1:7876115/1‑65 (MQ=255) aCTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcg > 1:13008049/1‑65 (MQ=255) aCTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCt < 1:13662820/68‑1 (MQ=255) aCTAGGCCCTCTGCACAAACCCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcgcat > 1:35313888/1‑66 (MQ=255) cTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTg > 1:27156449/1‑68 (MQ=255) tAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTgg < 1:20925687/68‑1 (MQ=255) aGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGt < 1:10385604/68‑1 (MQ=255) gCCCTCTGCACAAACGCCCCCTTTTCGGTGGCGTTTTTTATCGCCCCCGCACTACCAGCGCCTGGTcc > 1:37764889/1‑68 (MQ=255) gCCCTCTGCACAAACGCCCCCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:1567825/1‑68 (MQ=255) gCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:9437022/1‑68 (MQ=255) gCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:27893126/1‑68 (MQ=255) gCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:12724505/1‑68 (MQ=255) gCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:31175726/1‑68 (MQ=255) gCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:32593931/1‑68 (MQ=255) gCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:25485943/1‑68 (MQ=255) gCCATCTGCACAAACGCCACCTATTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:14931335/1‑68 (MQ=255) ccTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCa > 1:32016682/1‑67 (MQ=255) ccTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCa > 1:17622680/1‑67 (MQ=255) ccTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCa > 1:24047457/1‑67 (MQ=255) ctctGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCa > 1:28674391/1‑66 (MQ=255) ctctGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCa > 1:26114732/1‑66 (MQ=255) tctGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCt < 1:8932681/68‑1 (MQ=255) tctGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCt < 1:18420570/68‑1 (MQ=255) gCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACTCACTACCAGCGCCTGGTCCAGCTcgc < 1:4390403/68‑1 (MQ=255) acaAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGa > 1:1785577/1‑68 (MQ=255) caAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGAt > 1:11594473/1‑68 (MQ=255) aaCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:2505134/1‑68 (MQ=255) aaCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:36724532/1‑68 (MQ=255) aaCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:22317295/1‑68 (MQ=255) aaCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:30493956/1‑68 (MQ=255) aaCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:38801857/1‑68 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:1246838/1‑66 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:18186236/1‑66 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGc < 1:29013611/68‑1 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGc < 1:27654208/68‑1 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGc < 1:33226364/68‑1 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGc < 1:22845514/68‑1 (MQ=255) aCCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa < 1:5571815/68‑1 (MQ=255) aCCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa < 1:17387544/68‑1 (MQ=255) ccTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa > 1:15426070/1‑67 (MQ=255) ccTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa > 1:38125610/1‑67 (MQ=255) ccTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa > 1:24484760/1‑67 (MQ=255) tttCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCa < 1:27265440/68‑1 (MQ=255) tttCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCa < 1:3233812/68‑1 (MQ=255) tttCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCa < 1:3701452/68‑1 (MQ=255) tttCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCa < 1:23227917/68‑1 (MQ=255) ttCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAg < 1:4111327/68‑1 (MQ=255) ttCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAg < 1:18878122/68‑1 (MQ=255) | TCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTT > CP009273/3208248‑3208381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |