| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3208309 | NA (NA) | 5 (0.010) | 4/92 | NT | NA | intergenic (+62/+17) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase |
| ? | CP009273 | = 3208314 | NA (NA) | intergenic (+67/+12) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase | |||||
Only 100 of 569 total aligned reads displayed.
GATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAC > CP009273/3208242‑3208376 | gATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACC < 1:30681502‑M1/68‑1 (MQ=255)gATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACC < 1:8703357‑M1/68‑1 (MQ=255) tAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCttt < 1:14799890/68‑1 (MQ=255) cGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCgg > 1:28648466‑M2/1‑66 (MQ=255) ggTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggt < 1:20240599‑M2/68‑4 (MQ=255) ggTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggt < 1:20988341‑M2/68‑4 (MQ=255) aGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggtggc < 1:5574378‑M2/68‑7 (MQ=255) aGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggtggc < 1:24295618‑M2/68‑7 (MQ=255) ccGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCggtggcg > 1:10211727‑M2/1‑59 (MQ=255) ggATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGtttt > 1:33039681/1‑68 (MQ=255) aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGttttt < 1:32668376/67‑1 (MQ=255) aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGttttt < 1:4436393/67‑1 (MQ=255) tCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTa > 1:14446675/1‑68 (MQ=255) tCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTa > 1:23636225/1‑68 (MQ=255) gCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCg > 1:10628163/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGGGTTTTTTATCGc > 1:33843033/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:20448544/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:2128014/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:34717786/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:22911196/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:17514101/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:17359591/1‑67 (MQ=255) cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc > 1:25664267/1‑67 (MQ=255) gTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGcc < 1:10896539/67‑1 (MQ=255) gTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGcc < 1:25369052/67‑1 (MQ=255) gTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGcc < 1:14030212/67‑1 (MQ=255) gTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGcc < 1:6337224/67‑1 (MQ=255) tACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCAc < 1:29143347/68‑1 (MQ=255) aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACg < 1:28231242/68‑1 (MQ=255) aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACg < 1:36420661/68‑1 (MQ=255) aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACg < 1:21717978/68‑1 (MQ=255) aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACg < 1:18815784/68‑1 (MQ=255) aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACg < 1:12894756/68‑1 (MQ=255) cgccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGc > 1:16441390/1‑68 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGc > 1:1600592/1‑67 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGc > 1:1580582/1‑67 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCa < 1:7775995/68‑1 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCa < 1:11436025/68‑1 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCa < 1:37337356/68‑1 (MQ=255) gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCa > 1:29861306/1‑68 (MQ=255) cgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACt < 1:27445520/68‑1 (MQ=255) cgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACt < 1:3252239/68‑1 (MQ=255) cgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACt < 1:1893943/68‑1 (MQ=255) gcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTa < 1:23315000/68‑1 (MQ=255) gcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTa < 1:31500583/68‑1 (MQ=255) aCCCGGCACTAGGCCCTCTGCGCAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc > 1:9057949/1‑68 (MQ=255) aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc < 1:6003763/68‑1 (MQ=255) aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc < 1:6952422/68‑1 (MQ=255) aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc < 1:8436599/68‑1 (MQ=255) aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAc < 1:22158485/67‑1 (MQ=255) ccGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCa > 1:38609794/1‑67 (MQ=255) cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcgc < 1:18651757/67‑1 (MQ=255) cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcgc < 1:15286185/67‑1 (MQ=255) cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcg > 1:26095091/1‑66 (MQ=255) aCTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcg > 1:8057187/1‑65 (MQ=255) aCTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCt < 1:13662820/68‑1 (MQ=255) cTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTg > 1:27156449/1‑68 (MQ=255) cTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTg > 1:15060206/1‑68 (MQ=255) aGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTgg > 1:15498645/1‑67 (MQ=255) gCCCTCTGCACAAACGCCCCCTTTTCGGTGGCGTTTTTTATCGCCCCCGCACTACCAGCGCCTGGTcc > 1:37764889/1‑68 (MQ=255) gCCCTCTGCACAAACGCCCCCTTTTCGGTGGCGTTTTTTATCGCCCCCGCACTACCAGCGCCTGGTcc > 1:24202306/1‑68 (MQ=255) gCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCCGCGCCTGGTcc > 1:7556743/1‑68 (MQ=255) gCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:95990/1‑68 (MQ=255) gCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:31175726/1‑68 (MQ=255) gCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc > 1:26704033/1‑68 (MQ=255) cccTCTGCACAAACGCCACCgaaaagggggcggttgtgcagcgggcctagtgccgggtgcggcgtaac > 1:21909474‑M1/1‑20 (MQ=255) ccTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCa > 1:2957609/1‑67 (MQ=255) ccTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCa > 1:32016682/1‑67 (MQ=255) ccTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCa > 1:29355580/1‑67 (MQ=255) ctctGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGGCCa > 1:18268324/1‑66 (MQ=255) gCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcgc > 1:6467360/1‑68 (MQ=255) gCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcgc > 1:4864947/1‑68 (MQ=255) acaAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCATGCACTACCAGCGCCTGGTCCAGCTCGCGa > 1:13008396/1‑68 (MQ=255) acaAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcgcg < 1:12189905/67‑1 (MQ=255) acaAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGa > 1:38891522/1‑68 (MQ=255) acaAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGa > 1:37099749/1‑68 (MQ=255) aaCGCCACCgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccg > 1:10421122‑M1/1‑9 (MQ=255) aaCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:36724532/1‑68 (MQ=255) aaCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:2505134/1‑68 (MQ=255) aaCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:22317295/1‑68 (MQ=255) aCGCCACCgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccgg > 1:26261518‑M1/1‑8 (MQ=255) aCGCCACCgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccgg > 1:5687115‑M1/1‑8 (MQ=255) aCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:2783932/1‑67 (MQ=255) cGCCACCgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccgg > 1:17912417‑M1/1‑7 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:34268033/1‑66 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAc > 1:11650722/1‑66 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGc < 1:17832046/68‑1 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGc < 1:29013611/68‑1 (MQ=255) cGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGc < 1:35570212/68‑1 (MQ=255) aCCgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccggcctacc < 1:4113243‑M1/68‑66 (MQ=255) aCCgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccggcctacc < 1:34082942‑M1/68‑66 (MQ=255) aCCgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccggcctacc < 1:2000499‑M1/68‑66 (MQ=255) aCCgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccggcctacc > 1:1012011‑M1/1‑3 (MQ=255) ccgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccggcctaccg < 1:35202600‑M1/68‑67 (MQ=255) ccTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa > 1:24484760/1‑67 (MQ=255) ccTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa > 1:38125610/1‑67 (MQ=255) ccTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa > 1:12469608/1‑67 (MQ=255) cgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccggcctaccga < 1:19544671‑M1/68‑68 (MQ=255) cgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacgcctgatccggcctaccga < 1:20801459‑M1/68‑68 (MQ=255) cgaaaaggtggcgtttgtgcagagggcctagtgccgggtgcggcgtaacg < 1:16693839‑M1/50‑50 (MQ=255) | GATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAC > CP009273/3208242‑3208376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |