| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3392134 | 512 (1.090) | 24 (0.060) | 11/96 | NT | 5.1% | coding (101/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD |
| ? | CP009273 | = 3392148 | 453 (1.120) | coding (87/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD | |||||
TGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3392061‑3392134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggaTAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGCC < CP009273/3392148‑3392083 TGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTG > 1:27876302/1‑68TGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTG > 1:37853447/1‑68TGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTG > 1:8937096/1‑68 GTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGG < 1:1227817/68‑1 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:33580052/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:6032879/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:18198274/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:6736718/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:16920611/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:15612862/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:35351364/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:8597136/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:25848181/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:31692509/1‑68 CCCACATTTACGCGATGAGGCAAGGCCAGGATCCAAAACAACAAGATGAGTAACACCCAGTTTGGCCG > 1:7274153/1‑68 CCACATTTACGCGATGAGGCAAGGCCAGGATCCATTACAACAAGATGAGTAACACCCAGTTTGGCCGG > 1:36713103/1‑68 CCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACCCCCAGTTTGGCCGG > 1:1040179/1‑68 CCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGG < 1:36033996/68‑1 CCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGG < 1:36618468/68‑1 CCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGG > 1:18120145/1‑68 TGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTT > 1:15513238/1‑68 GGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCC > 1:6960591/1‑68 ATCCAATACAACAAGATGAGTAACAACCACTTTGGCCGGATAACCTGTTTGTTTTCCGGCCAAACTGG > 1:9787273/1‑68 TCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGG > 1:25460568/1‑68 CCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGT > 1:37331192/1‑68 ATACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:34452862/1‑68 TACAACAAGATGAGTAACACCCAGTTTGGCCGGATAGCGTGAGTGTTTTGCGGCCAAACTGGGGGTTA > 1:17204215/1‑68 ACAACAAGATGAGTAACACCCAGTTTTGCGGGATAACCTGATTGTTTTCCGGCCAGACTGGGTGTT > 1:21360828/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGTTAACCTGATTGTTTTCCGGCCATACTGGGTGTT > 1:28881547/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:19051030/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:17485949/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:10807320/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:9233563/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:31484314/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTT > 1:28837372/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTGTTCGGGCCAACCTGGGTGTT > 1:20262186/1‑66 ACAACAAGATGAGTAACACCCAGTTTGGCCGGATAACCTGATTCTTTTCCGGGCAAACTGCGGGTT > 1:29969538/1‑66 TGAGTAACACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGT > 1:10524938/1‑68 ACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCATACTGGGTGTTACTCATCTTGTTGTATTGG > 1:22283173/1‑68 ACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGG > 1:8109550/1‑68 ACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGG > 1:10391157/1‑68 ACCCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGG > 1:10437015/1‑68 CCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGA > 1:21541549/1‑67 CCAGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGA > 1:21091193/1‑67 AGTTTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGAT > 1:3711758/1‑66 TTGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTG > 1:5957405/1‑67 TGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTTTTGTATTGGATCCTGGC < 1:4730473/68‑1 TGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGC < 1:20028258/68‑1 TGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGC < 1:20351405/68‑1 TGGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGC < 1:6998231/68‑1 GGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCC < 1:8659808/68‑1 GGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCC < 1:15216179/68‑1 GGCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCC < 1:27882430/68‑1 GCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCT > 1:22997233/1‑68 GCCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGA > 1:37459969/1‑59 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGCTCCTGGCCTT > 1:13507327/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:11263737/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:33146572/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:38593953/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:38327896/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:8443681/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:10287959/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:20492839/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:30053499/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:6876354/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:17205638/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:27581980/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT > 1:15243421/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTCGATCCTGCCCTT > 1:4067960/1‑68 CCGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCACCTTGTTGTATTGGATCCTGGCCTT > 1:18160373/1‑68 CGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT < 1:9468888/67‑1 CGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT < 1:443922/67‑1 CGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT < 1:36104089/67‑1 CGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT < 1:23293028/67‑1 CGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT < 1:26094602/67‑1 CGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT < 1:31670675/67‑1 CGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT < 1:30675043/67‑1 CGGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTT < 1:28237501/67‑1 GGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGC < 1:4781608/68‑1 GGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGC < 1:18937011/68‑1 GGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGC < 1:30619863/68‑1 GGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGC < 1:30549374/68‑1 GGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGC < 1:30242761/68‑1 GGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTAATGGATCCTGGCCTTGC < 1:33538774/68‑1 GGATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCAACTTGTTGTATTGGATCCTGGCCTTGC < 1:27996363/68‑1 ATAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGCC > 1:37517966/1‑67 TGTGCCCACATTTACGCGATGAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3392061‑3392134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggaTAACCTGATTGTTTTCCGGCCAAACTGGGTGTTACTCATCTTGTTGTATTGGATCCTGGCCTTGCC < CP009273/3392148‑3392083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |