| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3392134 | 512 (1.090) | 24 (0.060) | 11/96 | NT | 5.1% | coding (101/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD |
| ? | CP009273 | = 3392148 | 453 (1.120) | coding (87/489 nt) | mreD | cell wall structural complex MreBCD transmembrane component MreD | |||||
Only 100 of 608 total aligned reads displayed.
GAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTCC > CP009273/3392081‑3392213 | gAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTa < 1:31794658/68‑1 (MQ=255) gCAAGGCCAGGATCCAATACAACAAGTTGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtcc < 1:27996363‑M2/68‑4 (MQ=255) aaGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccg < 1:30675043‑M2/67‑5 (MQ=255) ccAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAg > 1:21829149/1‑68 (MQ=255) ccAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAg > 1:20009180/1‑68 (MQ=255) cAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAgg < 1:3972592/68‑1 (MQ=255) cAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAgg < 1:31460534/68‑1 (MQ=255) cAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAg < 1:23932823/67‑1 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTAtccggccaaact > 1:3711758‑M2/1‑54 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAggg < 1:34610708/65‑1 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:36346965/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:22860659/1‑68 (MQ=255) aTCCAATACAACAAGATGAGTAACACCCAGATTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt > 1:286458/1‑68 (MQ=255) tCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCAt < 1:23069373/67‑1 (MQ=255) tCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATg > 1:27523217/1‑68 (MQ=255) ccAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGa < 1:37672086/68‑1 (MQ=255) ccAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGa < 1:14275802/68‑1 (MQ=255) acagcaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:8575511/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:7548503/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:34278165/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:24800727/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:28950382/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:8384556/1‑68 (MQ=255) acaacaAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgc > 1:19700102/1‑68 (MQ=255) acaaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagc > 1:38493422/1‑68 (MQ=255) acaaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagc > 1:20729085/1‑68 (MQ=255) acaaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagc > 1:24396034/1‑68 (MQ=255) caaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca < 1:1051934/68‑1 (MQ=255) aaGATGAGTAACACCCAGTTTGGCTGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca > 1:4403491/1‑67 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca > 1:18829752/1‑67 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca > 1:17061088/1‑67 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTgcagca > 1:16464851/1‑67 (MQ=255) aaGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCaa > 1:9133092/1‑68 (MQ=255) aGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAAc < 1:28445552/68‑1 (MQ=255) gATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACa > 1:10104595/1‑68 (MQ=255) gATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACa > 1:11004440/1‑68 (MQ=255) aTGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACa > 1:934534/1‑67 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgc < 1:18664910/68‑1 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgc > 1:12750941/1‑68 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgc < 1:8851135/68‑1 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgc < 1:32541614/68‑1 (MQ=255) tGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgc > 1:8168723/1‑68 (MQ=255) aGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgcgc > 1:38327809/1‑68 (MQ=255) gTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAgcgc < 1:20531746/67‑1 (MQ=255) gTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCa > 1:794700/1‑68 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTAtccggccaaactgggtgttactcatcttgttgt > 1:19051030‑M2/1‑33 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTAtccggccaaactgggtgttactcatcttgttgt > 1:28837372‑M2/1‑33 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAAt > 1:21155116/1‑68 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAAt > 1:26368249/1‑68 (MQ=255) aaCACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAAt > 1:11326541/1‑68 (MQ=255) acacCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATg < 1:17944156/68‑1 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:5953469/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:35261164/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg < 1:10367385/68‑1 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg > 1:16640341/1‑68 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg < 1:17440370/68‑1 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAg < 1:19468282/68‑1 (MQ=255) acCCAGTTTGGCCGGAAAACAATCAGGTAATCCGGCCAGGGAATGATTTCCAGCAACAGAGCAATGa > 1:1195732/1‑67 (MQ=255) cccAGTTTGGCCGGAAAACAATCAGGTTAtccggccaaactgggtgttactcatcttgttgtattgga > 1:25460568‑M2/1‑29 (MQ=255) cccAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAgg < 1:5295003/68‑1 (MQ=255) ccAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGa < 1:15789218/68‑1 (MQ=255) gTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAag > 1:30444039/1‑68 (MQ=255) tttGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAaga > 1:2374162/1‑68 (MQ=255) tttGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAaga > 1:4816748/1‑68 (MQ=255) tttGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAaga > 1:16251306/1‑68 (MQ=255) tttGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAaga > 1:33283463/1‑68 (MQ=255) tttGGCCGG‑AAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAagag > 1:21486240/1‑68 (MQ=255) ttGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAagag > 1:15590271/1‑68 (MQ=255) ttGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAagag > 1:36534697/1‑68 (MQ=255) ggCCGGAAAACAATCAGGTTAtccggccaaactgggtgttactcatcttgttgtattggatcctggcc > 1:6960591‑M2/1‑21 (MQ=255) gCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAagagag > 1:38707750/1‑67 (MQ=255) gCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAagagag > 1:35580553/1‑67 (MQ=255) cGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCa > 1:31058483/1‑68 (MQ=255) tgAAAACAATCACGGTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:28120022/67‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGTAAAGAGAGCCAg < 1:9678458/68‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:7192132/68‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:25012027/68‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:20314356/68‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:25989812/68‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:29679997/68‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:29415166/68‑1 (MQ=255) ggAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAg < 1:16120858/68‑1 (MQ=255) aCAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTAc < 1:13563373/68‑1 (MQ=255) aaTCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTAccc < 1:23281164/68‑1 (MQ=255) aTCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCa > 1:6381338/1‑68 (MQ=255) aTCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCa > 1:30036478/1‑68 (MQ=255) cAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGc < 1:36095948/68‑1 (MQ=255) ggTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCg > 1:22239554/1‑67 (MQ=255) ggTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCg > 1:18203508/1‑67 (MQ=255) gTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt > 1:22472703/1‑67 (MQ=255) gTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt > 1:32377916/1‑67 (MQ=255) gTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt > 1:1443462/1‑67 (MQ=255) gTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt > 1:11756936/1‑67 (MQ=255) ttATCTGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTc < 1:2617607/67‑1 (MQ=255) ttATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt < 1:32955995/66‑1 (MQ=255) ttATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTc < 1:37377316/67‑1 (MQ=255) gtATCCGGCCAGGGCATGATTTGCAGGAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGt < 1:30317668/65‑1 (MQ=255) tATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTcc < 1:33865624/67‑1 (MQ=255) tATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTcc < 1:25777705/67‑1 (MQ=255) tATCCCGCCAGGGCATGATTTGCAGCATCAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTcc < 1:26758835/67‑1 (MQ=255) | GAGGCAAGGCCAGGATCCAATACAACAAGATGAGTAACACCCAGTTTGGCCGGAAAACAATCAGGTTATCCGGCCAGGGCATGATTTGCAGCAACAGCGCAATGAGGAAAGAGAGCCAGATTACCCAGCGTCC > CP009273/3392081‑3392213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |