| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3652912 = | 561 (1.190) | 23 (0.060) | 8/98 | NT | 5.2% | coding (321/1158 nt) | mdtE | anaerobic multidrug efflux transporter, ArcA‑regulated |
| ? | CP009273 | 3652940 = | 351 (0.850) | coding (349/1158 nt) | mdtE | anaerobic multidrug efflux transporter, ArcA‑regulated | |||||
Only 100 of 719 total aligned reads displayed.
GGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGA > CP009273/3652846‑3652979 | atcctgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGc > 1:39013158‑M1/67‑68 (MQ=255)atcctgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGc > 1:12665947‑M1/67‑68 (MQ=255) gCGATTCGCTGTATCAGATTGGTCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTg > 1:3480126/1‑68 (MQ=255) gCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTg > 1:33223894/1‑68 (MQ=255) cctgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTg > 1:26142384‑M1/65‑68 (MQ=255) cGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTg < 1:12167766/67‑1 (MQ=255) tgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTGGc > 1:10146008‑M1/63‑68 (MQ=255) tgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTGGc > 1:5049963‑M1/63‑68 (MQ=255) tgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTGGc > 1:26478206‑M1/63‑68 (MQ=255) tgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTGGc > 1:11051746‑M1/63‑68 (MQ=255) tgacggcgaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTGGc > 1:8208011‑M1/63‑68 (MQ=255) tCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGaa > 1:13743527/1‑68 (MQ=255) gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAACGGCTCGCTGGCGAAAgcgc < 1:18215238/68‑1 (MQ=255) gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAgcgc < 1:33650033/68‑1 (MQ=255) gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAgcgc < 1:9742692/68‑1 (MQ=255) aTCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAgcgc > 1:35969523/1‑66 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctct < 1:37920143/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctct < 1:16112616/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctct < 1:20349241/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctct < 1:4124360/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctc > 1:8609405/1‑67 (MQ=255) cAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctctc < 1:32183034/68‑1 (MQ=255) cAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctctc < 1:30517176/68‑1 (MQ=255) cAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctctc < 1:7495975/68‑1 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctctcaa > 1:29268222/1‑65 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:9379464/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:17126442/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:25577374/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:5993586/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:12374159/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:33459971/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:31293605/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:15580140/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:29492344/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTATCTa > 1:5403744/1‑67 (MQ=255) ttGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctctct < 1:10833317/65‑1 (MQ=255) ttGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctctct < 1:32705988/65‑1 (MQ=255) ttGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTAc < 1:22878890/67‑1 (MQ=255) ttGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTAc < 1:11595188/67‑1 (MQ=255) tggtcttcagcaacgatgcctggcggttaaaggtgttgcgggccttGCTGGCGAAAGCGCGCTGTAcc < 1:6874098‑M1/22‑1 (MQ=255) tGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTAcc > 1:19238787/1‑67 (MQ=255) tGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCg < 1:24199780/68‑1 (MQ=255) ccTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCa > 1:19399610/1‑67 (MQ=255) ccTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCa > 1:1881846/1‑67 (MQ=255) ccTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCa > 1:13212203/1‑67 (MQ=255) cACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:3758836/1‑68 (MQ=255) cACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:7928642/1‑68 (MQ=255) aCCTTTACAGGCCGAGCTAAACTCCGCCAACGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:14010125/1‑67 (MQ=255) aCCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:25002629/1‑67 (MQ=255) aCCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:23506762/1‑67 (MQ=255) aCCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:36731553/1‑67 (MQ=255) aCCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:38419928/1‑67 (MQ=255) ccTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATg > 1:36462936/1‑67 (MQ=255) tttACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGccc < 1:34164790/68‑1 (MQ=255) ttACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCg < 1:17619039/68‑1 (MQ=255) aGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAGGCGCTCTCTACCGCCAGCAATGCCCGCAt > 1:26667705/1‑67 (MQ=255) aGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc > 1:34561601/1‑68 (MQ=255) aGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc > 1:37121290/1‑68 (MQ=255) aGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc > 1:10400771/1‑68 (MQ=255) aGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc > 1:21823684/1‑68 (MQ=255) aGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc > 1:20751225/1‑68 (MQ=255) aGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc > 1:1654248/1‑68 (MQ=255) ggCCGAGCTAAACTCCGCCAAATGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc > 1:8954827/1‑67 (MQ=255) ggCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCATCAATGCCCGCATc > 1:27915627/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCACTGCCCGCATCa > 1:19831489/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:6498183/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:20976427/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:17428262/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:35077499/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:27399567/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:16229940/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:28500128/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:14907904/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:31869033/1‑67 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:25975979/1‑66 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAc < 1:24701486/67‑1 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAc < 1:16758125/67‑1 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAc < 1:19051239/67‑1 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAc < 1:22485807/67‑1 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAc < 1:12847118/67‑1 (MQ=255) cGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAcc < 1:11342497/67‑1 (MQ=255) cGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAcc < 1:22163978/67‑1 (MQ=255) cTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTa > 1:30645309/1‑67 (MQ=255) aaaCTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAAcc < 1:6300678/68‑1 (MQ=255) tcTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACGGCCAGCAATGCCCGCATCACCTTTAACCGc < 1:567527/67‑1 (MQ=255) aCTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCg > 1:33008710/1‑67 (MQ=255) cTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGcc < 1:21412058/68‑1 (MQ=255) tCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAg > 1:26917460/1‑41 (MQ=255) tCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCa > 1:23120187/1‑68 (MQ=255) gtgatgcgggcattGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCa < 1:4832667‑M1/54‑1 (MQ=255) ccGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAg < 1:1419049/68‑1 (MQ=255) ccGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAg < 1:28914301/68‑1 (MQ=255) gggcattGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCCTCACCTTTAACCGCCAGGCATCg < 1:34299538‑M1/61‑1 (MQ=255) aaGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCg < 1:35397111/68‑1 (MQ=255) aGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGt > 1:1449547/1‑68 (MQ=255) aGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGt > 1:30007628/1‑68 (MQ=255) gCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGtt > 1:30910863/1‑67 (MQ=255) tCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGc < 1:35723438/67‑1 (MQ=255) tCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCt < 1:23960894/68‑1 (MQ=255) cGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTg > 1:17833198/1‑68 (MQ=255) | GGGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGA > CP009273/3652846‑3652979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |