| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1023817 = | NA (NA) | 7 (0.020) | 4/84 | NT | NA | intergenic (+2/+43) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein |
| ? | CP009273 | 1023851 = | NA (NA) | intergenic (+36/+9) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein | |||||
Only 100 of 543 total aligned reads displayed.
GGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGG > CP009273/1023750‑1023884 | gggTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATaaaa > 1:22634888/1‑68 (MQ=255) gatgagctggcgcagcccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaa < 1:1037688‑M1/2‑1 (MQ=255) gatgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaa < 1:20614220‑M1/2‑1 (MQ=255) gatgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaa < 1:19147177‑M1/2‑1 (MQ=255) gatgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaa < 1:8183256‑M1/2‑1 (MQ=255) atgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaaa < 1:20318748‑M1/3‑1 (MQ=255) atgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaaa < 1:16492068‑M1/3‑1 (MQ=255) tgagctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacaaa < 1:2870186‑M1/3‑1 (MQ=255) tAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAAt > 1:23378877/1‑67 (MQ=255) tAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATc < 1:30807412/68‑1 (MQ=255) ctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATcccc < 1:10672685‑M1/8‑1 (MQ=255) ctggcgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATcccc < 1:35097636‑M1/8‑1 (MQ=255) aTGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATcccc > 1:24385880/1‑68 (MQ=255) tgtgGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAACAATCCCCg > 1:7159542/1‑68 (MQ=255) tgtgGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCg > 1:1423990/1‑68 (MQ=255) tgtgGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCg > 1:26191126/1‑68 (MQ=255) tgtgGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCg > 1:19409483/1‑68 (MQ=255) tgtgGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCg > 1:32479947/1‑68 (MQ=255) cgcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATCCCCGGa > 1:22979916‑M1/57‑67 (MQ=255) gcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATCCCCggatg < 1:33496858‑M1/13‑3 (MQ=255) gcagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATCCCCGGAAg < 1:4239864‑M1/13‑1 (MQ=255) cagaccatccgcaaacaactccaggccccgcgtctgcgtaactaatccctgaacAAATCCCCGGAAgg < 1:14406431‑M1/14‑1 (MQ=255) gATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGc < 1:13936204/68‑1 (MQ=255) tGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCaa > 1:32668542/1‑68 (MQ=255) gATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCaaaa > 1:34332084/1‑68 (MQ=255) gATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCaaaa > 1:1306594/1‑68 (MQ=255) aTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCaaaa > 1:33933599/1‑67 (MQ=255) aTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCaaaa > 1:38342174/1‑67 (MQ=255) aTCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCaaaa > 1:7499026/1‑67 (MQ=255) cGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAAcc < 1:31043040/68‑1 (MQ=255) gCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCt < 1:11844921/68‑1 (MQ=255) tGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCtt > 1:11600969/1‑67 (MQ=255) cccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCg > 1:29931947/1‑68 (MQ=255) ccGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCgg > 1:13357986/1‑68 (MQ=255) gCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGa > 1:15007616/1‑68 (MQ=255) gCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGa > 1:25629132/1‑68 (MQ=255) gCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGa > 1:16124102/1‑68 (MQ=255) cTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGa < 1:9261704/67‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:38007782/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:31222603/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:2714917/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:35740864/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt > 1:36290567/1‑68 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:36763206/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:1209423/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:14510840/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCGGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:1995294/68‑1 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGtg > 1:28386439/1‑66 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:32306460/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:6598852/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:3455577/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:5521492/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:26634464/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:6041760/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:27771514/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:8435403/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:28144687/1‑68 (MQ=255) gaTCCCTCGCCTGGGCCTGGCCAAATAAAAAAACCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCa > 1:11088780/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:20738760/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:29268135/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:4926861/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:8814181/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:25165853/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:18637090/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg < 1:5791824/68‑1 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg < 1:32087726/68‑1 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTGCCGCGGATTTGTTCAgg > 1:18188498/1‑68 (MQ=255) ccTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAACACCTTCCGGGGATTTGTTCAGGGa < 1:24162733/68‑1 (MQ=255) ccTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGa > 1:1387772/1‑68 (MQ=255) ccTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGa < 1:21289069/68‑1 (MQ=255) ccTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGa < 1:23799012/68‑1 (MQ=255) ccTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGa < 1:10717920/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:31688075/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:17562773/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:27927231/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:22325360/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:10097437/68‑1 (MQ=255) cctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt > 1:6917302/1‑68 (MQ=255) ctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGtt > 1:38911136/1‑68 (MQ=255) ctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGtt > 1:17242906/1‑68 (MQ=255) ctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGtt > 1:21443023/1‑68 (MQ=255) gtaactaatccctgaacAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTAc < 1:10261540‑M1/51‑1 (MQ=255) gcctggCCAAATAAAAAATCCCCGGAAGGCCAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:12365354/1‑68 (MQ=255) gcctggCCAAATAAAAAATCCCCGGAAGGCAAAACCCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:15709182/1‑68 (MQ=255) gcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAggg > 1:21024160/1‑57 (MQ=255) gcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:33179515/1‑68 (MQ=255) gcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:11269138/1‑68 (MQ=255) gcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:12780579/1‑68 (MQ=255) gcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:24646256/1‑68 (MQ=255) cctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:15190549/1‑68 (MQ=255) taatccctgaacAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAg < 1:7748315‑M1/55‑1 (MQ=255) ccAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgc > 1:31355826/1‑68 (MQ=255) aaTAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCggg < 1:19593048/68‑1 (MQ=255) aTAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgggg < 1:37605597/68‑1 (MQ=255) aTAAAAAATCCCCGGAAGGCAAAAACCATCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgggg < 1:17698729/68‑1 (MQ=255) tAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGc < 1:25939/68‑1 (MQ=255) tAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGc < 1:3028976/68‑1 (MQ=255) tAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGc < 1:14832216/68‑1 (MQ=255) aaaaaTCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCt < 1:29715904/68‑1 (MQ=255) AAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTgg > 1:39133497‑M1/1‑68 (MQ=255) | GGGTTAAATGTGGTGATGGATCGCTGCCCGGCTATTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGG > CP009273/1023750‑1023884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |