New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1685627 =145 (0.310)15 (0.040) 9/88 NT 11.6% intergenic (+10/+216) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
?CP009273 1685659 = NA (NA)intergenic (+42/+184) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein

Only 100 of 343 total aligned reads displayed.

CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCT  >  CP009273/1685560‑1685693
                                                                   |                                                                  
gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga                                                                    <  1:6943221‑M1/1‑1 (MQ=255)
cATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCA                                                                    >  1:37639140‑M1/1‑68 (MQ=255)
  tGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAA                                                                  >  1:8987773‑M1/1‑68 (MQ=255)
    tgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAAc                                                                >  1:495482‑M1/64‑68 (MQ=255)
     ttGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAAC                                                                >  1:21406260‑M1/1‑67 (MQ=255)
       gCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCC                                                             <  1:15672477‑M1/68‑1 (MQ=255)
       aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc                                                             <  1:23288542‑M1/8‑1 (MQ=255)
       aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc                                                             <  1:23738916‑M1/8‑1 (MQ=255)
       aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc                                                             <  1:12528922‑M1/8‑1 (MQ=255)
       aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc                                                             <  1:11822439‑M1/8‑1 (MQ=255)
         gaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCgg                                                           <  1:36249069‑M1/10‑1 (MQ=255)
          aaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGga                                                          <  1:30431659‑M1/11‑1 (MQ=255)
           aaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGgag                                                         >  1:11362484‑M1/57‑68 (MQ=255)
           aaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGga                                                          >  1:584642‑M1/57‑67 (MQ=255)
           aaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGga                                                          >  1:20619532‑M1/57‑67 (MQ=255)
           aaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGga                                                          >  1:566171‑M1/57‑67 (MQ=255)
            gCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGgaga                                                        >  1:2928825/1‑68 (MQ=255)
             ccAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGaa                                                       >  1:1983015/1‑68 (MQ=255)
                 ctctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAAttt                                                    >  1:38402718/1‑67 (MQ=255)
                  tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTc                                                  >  1:33506494/1‑68 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                             <  1:17457885‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                             <  1:26590641‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                             <  1:25999406‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                             <  1:38309337‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                             <  1:23867516‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                             <  1:13591108‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                             <  1:6668258‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                             <  1:1950888‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                             <  1:4277885‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCAGAAGAAGTAATTAACGGCCAAAACGCAGGAGAATTTACActc                                              <  1:4516161‑M2/67‑4 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                            <  1:12721251‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                            <  1:36760459‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                            <  1:5094989‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                            <  1:24730675‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                            <  1:1222811‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                            <  1:38188983‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                            <  1:7638533‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                            <  1:2078634‑M2/68‑6 (MQ=255)
                         gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccgg                                           >  1:16904108‑M2/1‑62 (MQ=255)
                         gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccgg                                           >  1:22347673‑M2/1‑62 (MQ=255)
                          ttCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggc                                          <  1:30007784‑M2/68‑8 (MQ=255)
                              gtagcgcatcaggcaatctctggtttgttttaagatgAAAAAGCCGGAGAATTTTCACTCCGGCGttt                                      <  1:38633183‑M1/31‑1 (MQ=255)
                               gCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttt                                      <  1:37399764‑M2/67‑12 (MQ=255)
                               gCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttt                                      <  1:15608074‑M2/67‑12 (MQ=255)
                               gCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttt                                      <  1:12017118‑M2/67‑12 (MQ=255)
                                cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                    >  1:20449745/1‑68 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                   >  1:17878152/1‑68 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                   <  1:7862931/68‑1 (MQ=255)
                                    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCTTTTTCATc                                 <  1:16651589/67‑1 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAATCGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                            <  1:31400705/67‑1 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttttggccgtgaa                            >  1:2688805‑M2/1‑46 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                            >  1:34163082/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                            >  1:33192131/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                            >  1:3709454/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                            >  1:9528430/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                            >  1:10392470/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                            >  1:10081766/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                            <  1:17979388/67‑1 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                            >  1:21740970/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                            <  1:26457336/67‑1 (MQ=255)
                                         aaaTTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGcaa                            >  1:35998140/2‑67 (MQ=255)
                                            ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                        >  1:550873/1‑68 (MQ=255)
                                             tCCGCAGCCGTAATTCACGGCCAAAACGCCGGAGAATTATCActccggcgttttggccgtgaattact                       >  1:35846146‑M2/1‑42 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttttggccgtgaattact                       >  1:10463609‑M2/1‑42 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                       <  1:32683491/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                       <  1:24239469/68‑1 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                      <  1:30600328/68‑1 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                      <  1:18871710/68‑1 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                       >  1:27797743/1‑67 (MQ=255)
                                                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAGAACAAACCagag                 >  1:8545712/1‑68 (MQ=255)
                                                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                 >  1:824398/1‑68 (MQ=255)
                                                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                 >  1:24948333/1‑68 (MQ=255)
                                                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                 >  1:37970230/1‑68 (MQ=255)
                                                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                 >  1:32385535/1‑68 (MQ=255)
                                                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                 >  1:3996171/1‑68 (MQ=255)
                                                    gtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAgaga                <  1:6218469‑M1/53‑1 (MQ=255)
                                                    cagTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttttggccgtgaattactgctgcgg                >  1:26751822‑M2/1‑35 (MQ=255)
                                                     tttgttttcagatgAAAACGCCGGTGAATTTTCCCTCCGGCGTTTTCATCTGAAAACAAAccagagct               <  1:34559773‑M1/54‑3 (MQ=255)
                                                     tttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt               <  1:14969313‑M1/54‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                  <  1:34251420/65‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                  <  1:28087299/65‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                  <  1:18485815/65‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt               >  1:10993061/1‑68 (MQ=255)
                                                        gttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg             <  1:28821148‑M1/56‑1 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg             >  1:1723670/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg             >  1:22770947/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg             >  1:24091809/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg             >  1:8364348/1‑65 (MQ=255)
                                                            cACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGa        >  1:31227992/1‑68 (MQ=255)
                                                             aCGGCCAAAACGCCGGAGtgaaaattctccggcgttttggccgtgaattactgctgcggaattgccgg       >  1:13993591‑M1/1‑18 (MQ=255)
                                                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt       >  1:14294285/1‑68 (MQ=255)
                                                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt       >  1:24389500/1‑68 (MQ=255)
                                                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt       >  1:25659331/1‑68 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc     <  1:16340639/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc     <  1:37724809/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc     <  1:14671613/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc     <  1:720747/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc     <  1:37041491/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc     <  1:31600305/68‑1 (MQ=255)
                                                                 ccAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcg    <  1:35480354/67‑1 (MQ=255)
                                                                   |                                                                  
CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCT  >  CP009273/1685560‑1685693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.