New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1685627 =145 (0.310)15 (0.040) 9/88 NT 11.6% intergenic (+10/+216) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
?CP009273 1685659 = NA (NA)intergenic (+42/+184) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein

Only 100 of 362 total aligned reads displayed.

CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT  >  CP009273/1685592‑1685726
                                                                   |                                                                   
cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                                                     >  1:20449745/1‑68 (MQ=255)
   gcatcaggcaatctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATc                                                                  <  1:38383458‑M2/4‑1 (MQ=255)
       ggCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaa                                                              <  1:7737355/68‑1 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:10392470/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:3705762/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:34163082/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             <  1:17776914/67‑1 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGAGTTTTCATCTGaaa                                                             >  1:2814725/1‑67 (MQ=255)
         cAATTCCGAAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCAATCCGGCGTTTTCATCGGaaa                                                             >  1:18173120/1‑67 (MQ=38)
          gcaatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGCaaac                                                           <  1:38871733‑M1/43‑1 (MQ=255)
           caatctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAaaac                                                           <  1:32891412‑M2/11‑1 (MQ=255)
           caatctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAaaac                                                           <  1:28821148‑M2/11‑1 (MQ=255)
           aTTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca                                                          >  1:14680550/1‑68 (MQ=255)
            ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                                                         <  1:10149491/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:32683491/68‑1 (MQ=255)
             agctctggtttgttttcagatgaaaacgccggagggaaaattcaccggcgttttCATCTGAaaacaaa                                                        <  1:34559773‑M2/14‑1 (MQ=255)
              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                                                       <  1:18871710/68‑1 (MQ=255)
              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                                                       <  1:19158311/68‑1 (MQ=255)
                tctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCa                                                     <  1:34511788‑M1/49‑1 (MQ=255)
                  agcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   >  1:25381448/1‑68 (MQ=255)
                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                                                  >  1:3996171/1‑68 (MQ=255)
                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                                                  >  1:32385535/1‑68 (MQ=255)
                    gtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAATACAAACCAgaga                                                 <  1:24269794‑M1/53‑1 (MQ=255)
                     tttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                                                <  1:14969313‑M1/54‑1 (MQ=255)
                     tttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                                                <  1:16387881‑M1/54‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGTATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   <  1:24358641/65‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                                                  <  1:6091119/66‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   <  1:38517315/65‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:23680804/1‑67 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              <  1:24086609/67‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              <  1:2612236/67‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              <  1:14258758/67‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc                                             <  1:9611135/68‑1 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:14363471/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:37708183/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:3594472/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:8364348/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:17249440/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:4230324/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:30584058/1‑65 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:36958128/1‑68 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:16866562/1‑68 (MQ=255)
                             aCGACCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:37238884/1‑68 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:37880973/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:36096240/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:23383392/68‑1 (MQ=255)
                               gatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:10923414‑M1/64‑1 (MQ=255)
                                  cAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcgc                                    <  1:23810486/67‑1 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTTAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:24666731‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:26796461‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:21131239‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:10460938‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:11178276‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:8189815‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:14076707‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:20016173‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:5352691‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:15662486‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:9032843‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:7556591‑M1/1‑68 (MQ=255)
                                       CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAAGCAGAGATTGCCTGATGCGCTACGCt                              <  1:7181847‑M1/68‑1 (MQ=255)
                                       CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCATAGATTGCCTGATGCGCTACGCt                              >  1:10996098‑M1/1‑68 (MQ=255)
                                       CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt                              >  1:16722378‑M1/1‑68 (MQ=255)
                                        GCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCtt                             >  1:11997159‑M1/1‑68 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:30844386‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:30364292‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:6737571‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:25024928‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:38184636‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCCCCGTTTCCATCTGAAAACACACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:8724084‑M1/1‑67 (MQ=255)
                                            GAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc                                             >  1:16243099‑M1/1‑48 (MQ=255)
                                              gtgaaaattctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAg                        >  1:6299855‑M2/22‑67 (MQ=255)
                                              GAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAg                        >  1:6904644‑M1/1‑67 (MQ=255)
                                                aTTTTCACTGCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGc                      <  1:13440108/67‑1 (MQ=255)
                                                aTTTTCACTCCGTCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:33762837/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCCGAGATTGCCTGATGCGCTACGCTTATCAGGc                      <  1:23211726/67‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       >  1:29584384/1‑66 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:35082430/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:31264508/66‑1 (MQ=255)
                                                  tttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTa                   <  1:36659524/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAACCCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:38266013/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:20665047/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:27446055/68‑1 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:31857884/1‑68 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                <  1:9306265/68‑1 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:10020637/1‑68 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:27261556/1‑68 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:34919650/1‑68 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:35548510/1‑68 (MQ=255)
                                                      aCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCtt               >  1:26403495/1‑68 (MQ=255)
                                                       ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              >  1:11362484‑M2/13‑68 (MQ=255)
                                                        tccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              >  1:584642‑M2/12‑67 (MQ=255)
                                                         ccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCtttt             >  1:21440256‑M2/11‑67 (MQ=255)
                                                           ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt          <  1:11822439‑M2/60‑1 (MQ=255)
                                                           ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt          <  1:12528922‑M2/60‑1 (MQ=255)
                                                              gttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCa       >  1:495482‑M2/6‑68 (MQ=255)
                                                                tttCATCTGAAAACAAACCAGAGATTGCCTGATGAGCTACGCTTATCAGGCCTACCGTTTCCTGCAac     >  1:31476638‑M2/4‑68 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:21880877‑M2/67‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:17968458‑M2/67‑1 (MQ=255)
                                                                   cATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACt  >  1:5695301/1‑68 (MQ=255)
                                                                   |                                                                   
CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT  >  CP009273/1685592‑1685726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.