New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1821389323 (0.680)18 (0.050) 11/94 NT 6.8% coding (1128/1344 nt) astB succinylarginine dihydrolase
?CP009273 = 1821423 224 (0.570)coding (1094/1344 nt) astB succinylarginine dihydrolase

Only 100 of 512 total aligned reads displayed.

CACCCAGTCATTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCAC  >  CP009273/1821323‑1821456
                                                                  |                                                                   
cACCCAGTCATTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGtt                                                                    <  1:26317416/68‑1 (MQ=255)
  cccAGTCATTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGttct                                                                  >  1:22875242/1‑68 (MQ=255)
  cccAGTCATTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGttct                                                                  <  1:38845384/68‑1 (MQ=255)
   ccAGTCATTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGttct                                                                  >  1:2172336/1‑67 (MQ=255)
    cAGTCATTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGttcttc                                                                <  1:2812559/68‑1 (MQ=255)
    cAGTCATTGAGCGAATAAAACACCTTATCGTTCAACATCACAGCCGAATTCACCGCACCCCGttca                                                                  >  1:19336004/1‑65 (MQ=255)
        cATTGAGCGCATTAACCAGCGTATCGTTCATCATCACCGCCGGATGCACCGCCCGGCGttcttcttc                                                             <  1:33569940/67‑1 (MQ=255)
        cATTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGttcttct                                                               >  1:16688416/1‑65 (MQ=255)
        cATTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGttcttct                                                               >  1:38426856/1‑65 (MQ=255)
         aTTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGttcttct                                                               >  1:28536575/1‑64 (MQ=255)
         aTTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGttcttct                                                               >  1:5971665/1‑64 (MQ=255)
         aTTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTg                                                           <  1:484040/68‑1 (MQ=255)
         aTTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTg                                                           <  1:18428576/68‑1 (MQ=255)
         aTTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTg                                                           <  1:17466452/68‑1 (MQ=255)
         aTTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTg                                                           <  1:4148716/68‑1 (MQ=255)
         aTTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTg                                                           <  1:22465738/68‑1 (MQ=255)
          ttGAGCGCATTAAACAGCGTATCGTTGATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGt                                                          <  1:26778434/68‑1 (MQ=255)
          ttGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGt                                                          <  1:33260841/68‑1 (MQ=255)
          ttGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGt                                                          <  1:13102743/68‑1 (MQ=255)
          ttGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGt                                                          <  1:37723371/68‑1 (MQ=255)
          ttGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGt                                                          <  1:32758561/68‑1 (MQ=255)
          ttGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGt                                                          <  1:36701297/68‑1 (MQ=255)
           tGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTc                                                         >  1:8269963/1‑68 (MQ=255)
           tGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTc                                                         >  1:19217187/1‑68 (MQ=255)
           tGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTc                                                         <  1:13454250/68‑1 (MQ=255)
             cgcgcATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGACaa                                                       >  1:25280983/2‑68 (MQ=255)
             aGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTgcctgcggttgcgg                                                       >  1:27142030‑M1/1‑54 (MQ=255)
             aGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCaa                                                       >  1:33501868/1‑68 (MQ=255)
             aGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCaa                                                       >  1:16029780/1‑68 (MQ=255)
             aGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCaa                                                       >  1:12782663/1‑68 (MQ=255)
             aGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCaa                                                       >  1:2319455/1‑68 (MQ=255)
             aGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCaa                                                       >  1:7475113/1‑68 (MQ=255)
             aGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCaa                                                       >  1:12151403/1‑68 (MQ=255)
             aGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCaa                                                       >  1:24022537/1‑68 (MQ=255)
             aGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCaa                                                       >  1:35580700/1‑68 (MQ=255)
             aGCGCATTAAACAGCGTATCGTTCATCATCAAAGCCGGATTAACCGCCCGGCGTTGTTCTTCTTTCaa                                                       >  1:10987065/1‑68 (MQ=255)
               cgcATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAAt                                                      >  1:24586857/1‑67 (MQ=255)
                gcgttAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATa                                                     >  1:7021128/4‑67 (MQ=255)
                   ttAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATaccac                                                 <  1:14387103/68‑1 (MQ=255)
                      aaCAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCAccc                                               >  1:37427253/1‑67 (MQ=255)
                       aCAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGc                                             >  1:2942242/1‑68 (MQ=255)
                       aCAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGc                                             >  1:2978254/1‑68 (MQ=255)
                       aCAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGc                                             >  1:33095471/1‑68 (MQ=255)
                       aCAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGc                                             >  1:10194612/1‑68 (MQ=255)
                       aCAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGc                                             >  1:5697708/1‑68 (MQ=255)
                       aCAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGc                                             >  1:25536375/1‑68 (MQ=255)
                       aCAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGc                                             >  1:21972509/1‑68 (MQ=255)
                        cAGCGTATCGTTCATCATCACCGCCGGATTCCCCGCCCGGCGTgcctgcgggggcgggtggtagtggg                                            >  1:16584248‑M1/1‑43 (MQ=255)
                        cAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCa                                            >  1:8959479/1‑68 (MQ=255)
                        cAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCa                                            >  1:1149713/1‑68 (MQ=255)
                        cAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTGCTGTCAATACCACCCGct                                            >  1:4564021/1‑67 (MQ=255)
                            gTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAGTACCACCCGCAAcc                                         >  1:6823924/1‑67 (MQ=255)
                            gTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCa                                            <  1:13782410/64‑1 (MQ=255)
                            gTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAAcc                                         <  1:14920023/67‑1 (MQ=255)
                              aTCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTggctgcgggtgcgggtggtattgacagaaga                                      >  1:15385924‑M1/1‑37 (MQ=255)
                              aTCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCa                                      >  1:39122955/1‑68 (MQ=255)
                              aTCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCa                                      >  1:37320840/1‑68 (MQ=255)
                                 gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCCGGc                                   >  1:10453875/1‑68 (MQ=255)
                                 gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGc                                   >  1:31749391/1‑68 (MQ=255)
                                 gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGc                                   >  1:17671553/1‑68 (MQ=255)
                                 gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGc                                   >  1:23327964/1‑68 (MQ=255)
                                 gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGc                                   >  1:2927355/1‑68 (MQ=255)
                                   tcatcatcaCCGCCGGATTCACCGCCCGGGGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCac                                 <  1:2886832‑M2/68‑3 (MQ=255)
                                   tcatcatcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCac                                 <  1:20950247‑M2/68‑3 (MQ=255)
                                   tcatcatcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCac                                 <  1:34463163‑M2/68‑3 (MQ=255)
                                    catcatcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacg                                >  1:3594840‑M2/1‑65 (MQ=255)
                                        atcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgg                            <  1:36094883‑M2/68‑8 (MQ=255)
                                        atcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgg                            <  1:38693420‑M2/68‑8 (MQ=255)
                                        atcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgg                            <  1:25810595‑M2/68‑8 (MQ=255)
                                        atcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgg                            <  1:33747731‑M2/68‑8 (MQ=255)
                                         tcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccggg                           >  1:24866363‑M2/1‑60 (MQ=255)
                                         tcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccggg                           >  1:4024094‑M2/1‑60 (MQ=255)
                                         tcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgg                            <  1:29924075‑M2/67‑8 (MQ=255)
                                           aCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgggcg                         >  1:11827375‑M2/1‑58 (MQ=255)
                                              gccgGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgccgcc                      <  1:35342163/68‑1 (MQ=255)
                                              gccgGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgccgcc                      <  1:22349214/68‑1 (MQ=255)
                                                cgGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgccgccg                     >  1:10032919/1‑67 (MQ=255)
                                                 ggATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgccgccgcc                   <  1:9380288/68‑1 (MQ=255)
                                                   aTTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCAt                 >  1:36411291/1‑68 (MQ=255)
                                                   aTTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCAt                 >  1:30094909/1‑68 (MQ=255)
                                                     tCACCGCCCGGCGTgcctgcgggtgcgggtggtattgacagaagaagaacgccgggcggggaatccg                >  1:20594604‑M1/1‑14 (MQ=255)
                                                     tCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTc               <  1:31393106/68‑1 (MQ=255)
                                                     tCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTc               <  1:7983083/68‑1 (MQ=255)
                                                      cACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTc               >  1:2012172/1‑67 (MQ=255)
                                                      cACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCg              <  1:8700394/68‑1 (MQ=255)
                                                      cACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCg              <  1:38094521/68‑1 (MQ=255)
                                                         cGCCCGGCGTgcctgcggttgcgggtggtattgacagaagaagaacgccgggcggtgaatccggcggt           >  1:34193972‑M1/1‑10 (MQ=255)
                                                         cGCCCGGCGTgcctgcggttgcgggtggtattgacagaagaagaacgccgggcggtgaatccggcggt           >  1:32594488‑M1/1‑10 (MQ=255)
                                                            ccGGCGTgcctgcggttgcgggtggtattgacagaagaagaacgccgggcggtgaatccggcggtgat        <  1:24503567‑M1/68‑62 (MQ=255)
                                                            ccGGCGTgcctgcggttgcgggtggtattgacagaagaagaacgccgggcggtgaatccggcggtgat        <  1:23810647‑M1/68‑62 (MQ=255)
                                                            ccGGCGTgcctgcggttgcgggtggtattgacagaagaagaacgccgggcggtgaatccggcggtga         <  1:38652589‑M1/67‑61 (MQ=255)
                                                            ccGGCGTgcctgcggttgcgggtggtattgacagaagaagaacgccgggcggtgaatccggcggtga         <  1:32105330‑M1/67‑61 (MQ=255)
                                                            ccGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGc        <  1:32338967/68‑1 (MQ=255)
                                                            ccGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGc        <  1:38346086/68‑1 (MQ=255)
                                                             cGGCGTgcctgcggttgcgggtggtattgacagaagaagaacgccgggcggtgaatccggcggtgatg       <  1:29030806‑M1/68‑63 (MQ=255)
                                                             cGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCt       <  1:19541689/68‑1 (MQ=255)
                                                               gCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCtt      >  1:12307651/1‑67 (MQ=255)
                                                                cGTgcctgcggttgcgggtggtattgacagaagaagaacgccgggcggtgaatccggcggtgatgatg    >  1:32084200‑M1/1‑3 (MQ=255)
                                                                cGTgcctgcggttgcgggtggtattgacagaagaagaacgccgggcggtgaatccggcggtgatgat     <  1:30633178‑M1/67‑65 (MQ=255)
                                                                 gTgcctgcggttgcgggtggtattgacagaagaagaacgccgggcggtgaatccggcggtgatgatga   <  1:5046794‑M1/68‑67 (MQ=255)
                                                                  |                                                                   
CACCCAGTCATTGAGCGCATTAAACAGCGTATCGTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCAC  >  CP009273/1821323‑1821456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.