| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2148074 = | 419 (0.890) | 18 (0.040) | 13/96 | NT | 5.5% | coding (578/1248 nt) | mdtA | multidrug efflux system, subunit A |
| ? | CP009273 | 2148105 = | 260 (0.640) | coding (609/1248 nt) | mdtA | multidrug efflux system, subunit A | |||||
Only 100 of 526 total aligned reads displayed.
TGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAAC > CP009273/2148008‑2148141 | tGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTc > 1:31911729/1‑68 (MQ=255)atcccggtggtatcaccactggagatttggttaccaacatcaacctgcttgagaccaacgcgaccaTc < 1:27436856‑M1/2‑1 (MQ=255) cccggtggtatcaccactggagatttggttaccaacatcaccctgcttgagaccaacgcgaccaTCg < 1:7277784‑M1/3‑1 (MQ=255) cccggtggtatcaccactggagatttggttaccaacatcaacctgcttgagacgaacgcgaccaTCg < 1:26006573‑M1/3‑1 (MQ=255) cccggtggtatcaccactggagatttggttaccaacatcaacctgcttgagaccaacgcgaccaTCg < 1:27964847‑M1/3‑1 (MQ=255) cccggtggtatcaccactggagatttggttaccaacatcaacctgcttgagaccaacgcgaccaTCg < 1:25701288‑M1/3‑1 (MQ=255) cccggtggtatcaccactggagatttggttaccaacatcaacctgcttgagaccaacgcgaccaTCg < 1:17949015‑M1/3‑1 (MQ=255) tCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCg > 1:9510175/1‑66 (MQ=255) tCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCg > 1:5116374/1‑66 (MQ=255) gtggtatcaccactggagatttggttaccaacatcaacctgcttgagaccaacgcgaccaTCGa < 1:3873900‑M1/4‑1 (MQ=255) gTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTgg > 1:18941717/1‑68 (MQ=255) gAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGa > 1:12885581/1‑67 (MQ=255) gAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGa < 1:26500472/67‑1 (MQ=255) gAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGa > 1:9181690/1‑67 (MQ=255) gAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGa > 1:34127128/1‑67 (MQ=255) gAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGa > 1:4321798/1‑67 (MQ=255) aCCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCg > 1:33600061/1‑68 (MQ=255) aCCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCg < 1:37840270/68‑1 (MQ=255) ccGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCgg < 1:23414316/68‑1 (MQ=255) cGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGa < 1:11368833/68‑1 (MQ=255) cGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGa > 1:424548/1‑68 (MQ=255) cGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGa > 1:12552743/1‑68 (MQ=255) ccactggagatttggttaccaacatcaacctgcttgagaccaacgcgaccaTCGACTGGAGCCGGAtt < 1:480431‑M1/17‑1 (MQ=255) aaGGCACCATTACGGCTGATGAACCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGAtt < 1:18384095/68‑1 (MQ=255) aGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTa < 1:10648290/68‑1 (MQ=255) ggCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTa > 1:20183701/1‑67 (MQ=255) gCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTAcc > 1:13067245/1‑68 (MQ=255) gCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTAcc > 1:14824008/1‑68 (MQ=255) aCCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGc < 1:10424726/68‑1 (MQ=255) aTTAAGGCTGATTCAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCAcc < 1:8547257/68‑1 (MQ=255) aTTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCAcc < 1:4018522/68‑1 (MQ=255) aTTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCAcc < 1:26942131/68‑1 (MQ=255) tAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAg > 1:13181185/1‑68 (MQ=255) aaGGCTGATGAAGCAAGCGTTTCCAGCGCGCAGCTGCAACTCGACTGGAGCCTGATTACCGCACCAGt < 1:6971499/68‑1 (MQ=255) aaGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGt < 1:15518660/68‑1 (MQ=255) aaGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGt < 1:1421892/68‑1 (MQ=255) aaGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGt < 1:6148834/68‑1 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:10023750/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:31086523/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:11012465/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:5399161/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:31713246/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:32240834/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:32550195/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:35173797/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:381730/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:25418894/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:19335725/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:19746277/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:20048029/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:24411505/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:22876249/1‑68 (MQ=255) ggCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCg > 1:23863488/1‑68 (MQ=255) gCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGa > 1:11797490/1‑68 (MQ=255) gCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGa > 1:36639299/1‑68 (MQ=255) gCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGa > 1:36150960/1‑68 (MQ=255) gCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGa > 1:35806653/1‑68 (MQ=255) cTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGAt > 1:21154258/1‑68 (MQ=255) ttgaAGCTAGCGTTGCCAGCGCTGAGCTGCAACTCGACTGGAGCCGGATTTCCGCACCAGTCGATGGt < 1:1731991/67‑1 (MQ=255) tgaAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGt < 1:29107178/67‑1 (MQ=255) gaAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTcg < 1:3601431/68‑1 (MQ=255) gaAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTc > 1:34356703/1‑67 (MQ=255) gaAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTc > 1:36425682/1‑67 (MQ=255) caagcGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGtt > 1:13801214/1‑68 (MQ=255) agcGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTgg < 1:33028537/68‑1 (MQ=255) agcGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTgg < 1:37053356/68‑1 (MQ=255) cGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTgg > 1:22275037/1‑66 (MQ=255) cGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTgg > 1:15200831/1‑66 (MQ=255) gTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGtc > 1:6623653/1‑67 (MQ=255) gTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGt < 1:25049045/66‑1 (MQ=255) gTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGt < 1:3395571/66‑1 (MQ=255) gTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGt < 1:21932354/66‑1 (MQ=255) gTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGt < 1:1023793/66‑1 (MQ=255) gTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGt < 1:16540922/66‑1 (MQ=255) gTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGt < 1:30504870/66‑1 (MQ=255) gcttgagcccaacgcgaccaTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCa > 1:23179309‑M1/21‑68 (MQ=255) ccAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCaa > 1:29526764/1‑67 (MQ=255) ccAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCaa > 1:1088415/1‑67 (MQ=255) cAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAga > 1:37601426/1‑67 (MQ=255) cAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGc > 1:35705869/1‑68 (MQ=255) cgcgcAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGGCTCAAGCAgg > 1:28721491/1‑68 (MQ=255) gcgcAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAgg < 1:14562900/67‑1 (MQ=255) gcgcAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAgg < 1:20819937/67‑1 (MQ=255) gcgcAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAgg < 1:24199427/67‑1 (MQ=255) gcgcAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAgg < 1:34489741/67‑1 (MQ=255) gcgcAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAg < 1:7882401/66‑1 (MQ=255) gcAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTg < 1:11500799/68‑1 (MQ=255) aGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGa < 1:13473190/67‑1 (MQ=255) gCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATg > 1:2845306/1‑68 (MQ=255) gCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATg > 1:7602959/1‑68 (MQ=255) gcgaccaTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGt < 1:30116527‑M1/61‑1 (MQ=255) tGCAACTCGACTGGAGCCGGTTTACCGATCCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGAt < 1:32041779/65‑1 (MQ=255) tGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGAt < 1:21361810/65‑1 (MQ=255) tGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGtt < 1:16875041/68‑1 (MQ=255) tGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGtt < 1:27648047/68‑1 (MQ=255) tGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGt < 1:5892227/67‑1 (MQ=255) gCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTg > 1:8769565/1‑68 (MQ=255) cTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTa > 1:1600548/1‑67 (MQ=255) cTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTa > 1:29773191/1‑67 (MQ=255) cTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTa > 1:4138152/1‑67 (MQ=255) | TGGTCAGTGAAACCGAAGGCACCATTAAGGCTGATGAAGCAAGCGTTGCCAGCGCGCAGCTGCAACTCGACTGGAGCCGGATTACCGCACCAGTCGATGGTCGCGTTGGTCTCAAGCAGGTTGATGTTGGTAAC > CP009273/2148008‑2148141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |