New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292408 (0.860)22 (0.050) 11/98 NT 5.0% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 473 (1.150)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 719 total aligned reads displayed.

TGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGC  >  CP009273/2499226‑2499358
                                                                  |                                                                  
 gCCGATAGCGTGACCGGTGTTATGACGGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:27580901/1‑67 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:11841442/1‑67 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:17329727/1‑67 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:36489336/1‑67 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:5261953/1‑67 (MQ=255)
    gATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCgg                                                               <  1:18794579/68‑1 (MQ=255)
    gATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCgg                                                               <  1:14810044/68‑1 (MQ=255)
       aGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCa                                                             >  1:24848757/1‑67 (MQ=255)
       aGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCAt                                                            <  1:29300102/68‑1 (MQ=255)
         cGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          >  1:24697627/1‑68 (MQ=255)
         cGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          >  1:23872365/1‑68 (MQ=255)
         cGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          >  1:13028706/1‑68 (MQ=255)
          gTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATc                                                           <  1:8836923/66‑1 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAAcc                                                    <  1:23428394/68‑1 (MQ=255)
                  tgtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctg                                                  <  1:14571937/67‑1 (MQ=255)
                  tgtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctg                                                  <  1:37674383/67‑1 (MQ=255)
                   gtTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctgc                                                 <  1:19682164/67‑1 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGtgcgctgccagcaggttgccgatg                                            >  1:14431822‑M1/1‑43 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGGGGCATCGTCAACCTGCTGGCa                                            >  1:27916331/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCACCCTGCTGGCa                                            >  1:38990823/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:3322620/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:26627639/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:2316526/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:28917707/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:20111561/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:13544922/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:16563086/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:3572144/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          <  1:7804702/67‑1 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAgc                                          >  1:28299319/1‑67 (MQ=255)
                          ccGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAAACTGCTGGCAgc                                          >  1:8547357/1‑67 (MQ=255)
                              aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     >  1:33986471‑M2/1‑66 (MQ=255)
                              aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     >  1:3244696‑M2/1‑66 (MQ=255)
                               aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgc                                    >  1:33533224‑M2/1‑65 (MQ=255)
                               aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     <  1:33444883‑M2/67‑3 (MQ=255)
                                tAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgcc                                   <  1:12638561‑M2/68‑5 (MQ=255)
                                 aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                  <  1:12198085‑M2/68‑6 (MQ=255)
                                   tCGCCATAACCTGCTTCTGTAATGACCCGTCGAGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                <  1:5997677‑M2/68‑8 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGCCCCGGCGCGCGGCATCGGCCACCTGCTGGCAGCGCAcgccggg                                >  1:11112758‑M2/1‑60 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                >  1:30794447‑M2/1‑60 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                >  1:20983227‑M2/1‑60 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                >  1:4426161‑M2/1‑60 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                >  1:37170642‑M2/1‑60 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                <  1:14977468‑M2/67‑8 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                <  1:11630004‑M2/67‑8 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgg                                 >  1:26189171‑M2/1‑60 (MQ=255)
                                       cATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtca                             >  1:9453839‑M2/1‑57 (MQ=255)
                                       cATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtca                             >  1:33655035‑M2/1‑57 (MQ=255)
                                        aTAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGaa                           >  1:36904325/1‑68 (MQ=255)
                                        aTAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGaa                           <  1:15586382/68‑1 (MQ=255)
                                         tAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAAt                          <  1:16206055/68‑1 (MQ=255)
                                           aCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcg                        <  1:25998392/68‑1 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       >  1:31906348/1‑68 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:32948158/1‑68 (MQ=255)
                                              tGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCgg                     <  1:29706500/68‑1 (MQ=255)
                                                cTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                   >  1:3735398/1‑68 (MQ=255)
                                                 ttCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagca                  >  1:10657562‑M1/1‑18 (MQ=255)
                                                 ttCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccggggctttacagaagca                  >  1:38251035‑M1/1‑18 (MQ=255)
                                                  tCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcag                 >  1:34902430‑M1/1‑17 (MQ=255)
                                                  tCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcag                 >  1:14010320‑M1/1‑17 (MQ=255)
                                                  tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                 >  1:31505181/1‑68 (MQ=255)
                                                    tGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                >  1:37270225/1‑67 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:36245764/68‑1 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:11357120/68‑1 (MQ=255)
                                                      tAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                >  1:38618118/1‑65 (MQ=255)
                                                       aaTGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtgattacagaagcaggttag            >  1:20371789‑M1/1‑12 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:20631583/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:19244131/1‑67 (MQ=255)
                                                         tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg          >  1:17523012/1‑68 (MQ=255)
                                                         tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg          >  1:15901231/1‑68 (MQ=255)
                                                           aCCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:10123297/1‑67 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgctgccgcgcgccgggtcagtacagaagcaggttatggcg        >  1:6375105‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgctcgccgggtcattacagaagcaggttatggcg        >  1:22788812‑M1/1‑7 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcga       <  1:1539398‑M1/68‑62 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        <  1:23669291‑M1/67‑61 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcagggtatggcg        >  1:31253435‑M1/1‑7 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCCCGCCGGGGGGATTCGCGGAGATTGCTGCGa         >  1:25596501/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:34402160/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:17829217/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:7492776/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:27049207/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:13691300/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:19133608/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:28666844/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:16987464/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCAGCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:10772632/1‑66 (MQ=255)
                                                              cGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgact     <  1:35097370‑M1/68‑64 (MQ=255)
                                                              cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg     <  1:22283755/68‑1 (MQ=255)
                                                              cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg     <  1:4122163/68‑1 (MQ=255)
                                                              cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg     <  1:22096943/68‑1 (MQ=255)
                                                               ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt    <  1:30168191/68‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGCATCGCGGAGATTGCTGCGAGCtgtg   >  1:18442996/1‑67 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:29984902/67‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:10426536/67‑1 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactatt  >  1:4949172‑M1/1‑2 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactatt  >  1:5537665‑M1/1‑2 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactatt  >  1:24006378‑M1/1‑2 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactat   <  1:31277500‑M1/67‑66 (MQ=255)
                                                                  gtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactatt  >  1:2113164‑M1/1‑1 (MQ=255)
                                                                  gcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGc  <  1:6885137/67‑1 (MQ=255)
                                                                  |                                                                  
TGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGC  >  CP009273/2499226‑2499358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.