New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292408 (0.860)22 (0.050) 11/98 NT 5.0% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 473 (1.150)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 614 total aligned reads displayed.

GAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499254‑2499387
                                                                   |                                                                  
  aaTAGTCGCCATAACCTGCTTCTGTAATGACCCTGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:33380207‑M2/1‑66 (MQ=255)
  aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:4949172‑M2/1‑66 (MQ=255)
  aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:30800368‑M2/1‑66 (MQ=255)
  aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:5537665‑M2/1‑66 (MQ=255)
  aaTAGTCGCCATAACCTGCTTCGGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:22131047‑M2/1‑66 (MQ=255)
   aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:27115039‑M2/67‑3 (MQ=255)
     aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                                               <  1:28089418‑M2/68‑6 (MQ=255)
     aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                                               <  1:30167165‑M2/68‑6 (MQ=255)
        cgacATAAACCGCTTCTTTAATGACCAGTCGCGCGCCATCGGCAACCTGCGGGCAGCGCACGCCgg                                                              <  1:37229079/63‑1 (MQ=255)
        cGCCATACCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:2565396‑M2/1‑60 (MQ=255)
        cGCCATAACCTGCTTCTGTACTGACCCGGCGCGCGGCAGCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:6375105‑M2/1‑60 (MQ=255)
        cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:821328‑M2/1‑60 (MQ=255)
        cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             <  1:17097775‑M2/67‑8 (MQ=255)
        cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             <  1:23669291‑M2/67‑8 (MQ=255)
            ctaACCTGCTTCTGTAATCACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcatt                                                        >  1:20371789‑M2/2‑56 (MQ=255)
            aTAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGaa                                                        <  1:31151960/68‑1 (MQ=255)
               aCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattaca                                                     >  1:21026474‑M2/1‑53 (MQ=255)
               aCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcg                                                     <  1:25998392/68‑1 (MQ=255)
               aCCTGCTACTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGCCAGCGCAcgccgggtcattaca                                                     >  1:3624376‑M2/1‑53 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacag                                                    >  1:37433460‑M2/1‑52 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:9090296/1‑68 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:36492268/1‑68 (MQ=255)
                ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:12018008/1‑68 (MQ=255)
                 cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                                                   >  1:14010320‑M2/1‑51 (MQ=255)
                 cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                                                   >  1:33081952‑M2/1‑51 (MQ=255)
                 cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:36973197/1‑68 (MQ=255)
                 cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:27762044/1‑68 (MQ=255)
                  tGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaa                                                  >  1:10657562‑M2/1‑50 (MQ=255)
                  tGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCgg                                                  <  1:29753177/68‑1 (MQ=255)
                     ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgaga                                               <  1:13568295/68‑1 (MQ=255)
                       cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcagg                                             >  1:18782790‑M2/1‑45 (MQ=255)
                       cTGTAATGACCCGGCGCGCGGCATCGGCACCCTGCTGGCAGCGCAcgccgggtcattacagaagcagg                                             >  1:11437219‑M2/1‑45 (MQ=255)
                        tGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                                             >  1:23011712/1‑67 (MQ=255)
                         gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                                             >  1:2939105/1‑66 (MQ=255)
                         gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc                                           <  1:22622054/68‑1 (MQ=255)
                           aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:17389834/1‑67 (MQ=255)
                             tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:38498853/1‑68 (MQ=255)
                             tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:31438128/1‑68 (MQ=255)
                             tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:24542034/1‑68 (MQ=255)
                             tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:33786926/1‑68 (MQ=255)
                             tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:15901231/1‑68 (MQ=255)
                              gACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:11696808/1‑68 (MQ=255)
                               aCCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:10123297/1‑67 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:23361431/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:5289851/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:13093494/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:44503/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:31982622/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:16299239/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:17611038/1‑66 (MQ=255)
                                cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:19133608/1‑66 (MQ=255)
                                  cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg                                  <  1:22283755/68‑1 (MQ=255)
                                  cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg                                  <  1:34126195/68‑1 (MQ=255)
                                  cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg                                  <  1:26731098/68‑1 (MQ=255)
                                   ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt                                 <  1:14591834/68‑1 (MQ=255)
                                   ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt                                 <  1:15051704/68‑1 (MQ=255)
                                   ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt                                 <  1:26200863/68‑1 (MQ=255)
                                     cgggcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:32748423/64‑1 (MQ=255)
                                     cgcgcgGCATCGTCTACCTGCTGGCAGCGCACGCCGGGGCGAATCGTGGAGATTGCTGCGAGCtgtg                                <  1:15421805/67‑1 (MQ=255)
                                     cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGCATCGCGGAGATTGCTGCGAGCtgtg                                >  1:18442996/1‑67 (MQ=255)
                                     cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:28764332/67‑1 (MQ=255)
                                      gcgcgGCATCGTCACCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                >  1:20801879/1‑66 (MQ=255)
                                      gcgcgGCATCGACAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGc                               <  1:33545318/67‑1 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:23902671/67‑1 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:3543619/67‑1 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:16841105/67‑1 (MQ=255)
                                        gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:25208941/67‑1 (MQ=255)
                                            cATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcaggttatggcgactatttcggtc                         >  1:11038560‑M2/1‑24 (MQ=255)
                                             aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGa                       <  1:28990287/68‑1 (MQ=255)
                                               cGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACa                     <  1:35867013/68‑1 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAtt                  >  1:4143232/1‑68 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAtt                  <  1:38196426/68‑1 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:8598750/67‑1 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:34461369/67‑1 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:19877161/67‑1 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:3133594/67‑1 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:5990435/67‑1 (MQ=255)
                                                  cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTATGCCTGCAGGACAAt                   <  1:7902998/67‑1 (MQ=255)
                                                    aCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTg                >  1:15627875/1‑68 (MQ=255)
                                                     ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGCGCTGTGCCTGCAGGTCACTTTGa               >  1:38920698/1‑68 (MQ=255)
                                                     ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:24929117/1‑68 (MQ=255)
                                                     ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:10406912/1‑68 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:7043213/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:9560025/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:37783455/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:24050680/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:21174878/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:20137087/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:17875786/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:14798404/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:13790641/68‑1 (MQ=255)
                                                          tgGCAGCGCACGCCGGGACGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:21684502/68‑1 (MQ=255)
                                                           ggCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACg         <  1:8766014/68‑1 (MQ=255)
                                                            gCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGt        >  1:34928709/1‑68 (MQ=255)
                                                            gCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGt        >  1:14356878/1‑68 (MQ=255)
                                                              aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGtt       <  1:39081679/67‑1 (MQ=255)
                                                              aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTa      >  1:26563696/1‑68 (MQ=255)
                                                              aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTa      >  1:19417367/1‑68 (MQ=255)
                                                              aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTa      >  1:7643915/1‑68 (MQ=255)
                                                                 gcACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTaa     <  1:12496274/66‑1 (MQ=255)
                                                                   |                                                                  
GAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499254‑2499387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.