| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2542953 = | 565 (1.200) | 24 (0.060) | 10/98 | NT | 5.0% | intergenic (+188/+52) | yfeW/yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| ? | CP009273 | 2542983 = | 413 (1.000) | intergenic (+218/+22) | yfeW/yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic | |||||
Only 100 of 655 total aligned reads displayed.
TTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAA > CP009273/2542886‑2543019 | tCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAg < 1:14517093/68‑1 (MQ=255) ctattatttcgcaccgtcgctggacaagttgatggcgctgtaagcgtttctgattcattgattaaAg > 1:2040180‑M1/66‑67 (MQ=255) ctattatttcgcaccgtcgctggacaagttgatggcgctgtaagcgtttctgattcattgattaaAg > 1:22109397‑M1/66‑67 (MQ=255) ctattatttcgcaccgtcgctggacaagttgatggcgctgtaagcgtttctgattcattgattaaAg > 1:17791941‑M1/66‑67 (MQ=255) ctattatttcgcaccgtcgctggacaagttgatggcgctgtaagcgtttctgattcattgattaaAg > 1:18970791‑M1/66‑67 (MQ=255) ctattatttcgcaccgtcgctggacaagttgatggcgctgtaagcgtttctgattcattgattaaAg > 1:36821731‑M1/66‑67 (MQ=255) tattatttcgcaccgtcgctggacaagttgatggcgctgtaagcgtttctgattcattgattaaAgg > 1:28079762‑M1/65‑67 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCca > 1:2460244/1‑68 (MQ=255) aGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCca > 1:29478167/1‑68 (MQ=255) tatttcgcaccgtcgctggacaagttgatggcgctgtaagcgtttctgattcattgattaaAGGCcag < 1:35435838‑M1/7‑1 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcag > 1:32783601/1‑67 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcag > 1:28970506/1‑67 (MQ=255) ccGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcagtc > 1:33841484/1‑68 (MQ=255) ccGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcagtc > 1:29217538/1‑68 (MQ=255) ccGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcag < 1:22444536/66‑1 (MQ=255) cGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcagtca < 1:21299382/68‑1 (MQ=255) cGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcagtc < 1:14890571/67‑1 (MQ=255) cGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcagtc < 1:33091592/67‑1 (MQ=255) aTAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcagtcagt < 1:37389773/67‑1 (MQ=255) aTAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTa < 1:21845902/68‑1 (MQ=255) tAATGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTTGTCAACAATCTGAGGCCAGTCAGTa < 1:12826330/67‑1 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTa < 1:1045809/67‑1 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTa < 1:30081370/67‑1 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTa < 1:32323069/67‑1 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTa < 1:32452846/67‑1 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTa < 1:16876128/67‑1 (MQ=255) tAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTa < 1:16366409/67‑1 (MQ=255) gCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGtt > 1:11863957/1‑68 (MQ=255) gCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGtt > 1:26548607/1‑68 (MQ=255) cGTTCACGCCGCATCCGGCGTGTACAACGGGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGtt > 1:15678492/1‑67 (MQ=255) cGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGtt > 1:31025099/1‑67 (MQ=255) cGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGtt > 1:14089191/1‑67 (MQ=255) cGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGtt > 1:28851224/1‑67 (MQ=255) cGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGtt > 1:2690123/1‑67 (MQ=255) cGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGtt > 1:25593913/1‑67 (MQ=255) cGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGt < 1:37884400/66‑1 (MQ=255) cACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGc < 1:38991031/68‑1 (MQ=255) cACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGc < 1:31888621/68‑1 (MQ=255) aCGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTg > 1:31444858/1‑66 (MQ=255) cgcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTgg < 1:20123203/67‑1 (MQ=255) cgcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGc < 1:25206736/68‑1 (MQ=255) cgcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGc < 1:38141816/68‑1 (MQ=255) gcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGcc < 1:8173648/68‑1 (MQ=255) gcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGcc < 1:35708156/68‑1 (MQ=255) gcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGcc < 1:11130988/68‑1 (MQ=255) gcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGcc < 1:4283819/68‑1 (MQ=255) gcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGcc < 1:7075634/68‑1 (MQ=255) gcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGcc < 1:17161502/68‑1 (MQ=255) gcATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGcc < 1:6487897/68‑1 (MQ=255) tCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCttt > 1:35027364/1‑68 (MQ=255) tCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCttt < 1:12551458/68‑1 (MQ=255) tCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCGGGCCttt > 1:3076519/1‑68 (MQ=255) ccGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTa < 1:19475253/68‑1 (MQ=255) ggCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAAt < 1:6043148/68‑1 (MQ=255) ggcgctgtaagcgtttctgattaattgattaaAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATc < 1:27076698‑M1/36‑1 (MQ=255) cGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa > 1:23521350/1‑68 (MQ=255) cGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa > 1:36424463/1‑68 (MQ=255) cGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa > 1:4458707/1‑68 (MQ=255) gtACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAAt < 1:7355284/67‑1 (MQ=255) aCAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa < 1:23055894/68‑1 (MQ=255) aCAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa > 1:19651343/1‑68 (MQ=255) aCAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa < 1:34184547/68‑1 (MQ=255) aCAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa < 1:570110/68‑1 (MQ=255) aCAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa < 1:6731200/68‑1 (MQ=255) aCAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa > 1:8795755/1‑68 (MQ=255) aCAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGa < 1:7941768/67‑1 (MQ=255) cAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa > 1:2270398/1‑67 (MQ=255) aCGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCa > 1:13405638/1‑68 (MQ=255) aCGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCa > 1:10011487/1‑68 (MQ=255) aCGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCa > 1:30322142/1‑68 (MQ=255) aCGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCa > 1:28465281/1‑68 (MQ=255) gcggACTTGGTCAACAATCTGAGTCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGa < 1:37159074/68‑1 (MQ=255) gcgcACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGa > 1:3355736/1‑68 (MQ=255) gcgcACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGa > 1:24909796/1‑68 (MQ=255) gcgcACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGa < 1:18294290/68‑1 (MQ=255) gcgcACTTGGTCAACAATCTGAGGCCAGTAAGTAATGTTACTCCCTGGCCTTTAAACAATGAATCAGa > 1:24047491/1‑68 (MQ=39) cgtttctgattcattgattaaAGGCCAGTCAGTAATGTTAGTGCCGGGCCGTTAATCAATGCATCAg < 1:34805373‑M1/46‑1 (MQ=255) cgtttctgattcattgattaaAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGa < 1:16137996‑M1/47‑1 (MQ=255) tttctgattcattgattaaAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaa < 1:12283943‑M1/48‑1 (MQ=255) gcACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaaa < 1:5569942/68‑1 (MQ=255) gcACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaaa < 1:34693253/68‑1 (MQ=255) gcACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaaa < 1:35986892/68‑1 (MQ=255) aCTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAAc < 1:27576777/67‑1 (MQ=255) aCTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACg < 1:21546828/68‑1 (MQ=255) aCTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACg < 1:18608372/68‑1 (MQ=255) cTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAAc > 1:38727526/1‑66 (MQ=255) ttGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCt < 1:10761137/68‑1 (MQ=255) ttcattgattaaAGGCCAGTCAGTAATGTTACTGCGTGGCCTGTAATCAATGATTCAGAAACGCTTa < 1:38497709‑M1/55‑1 (MQ=255) tCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACa > 1:20985468/1‑68 (MQ=255) tCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACa > 1:27652585/1‑68 (MQ=255) aacaaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc > 1:11544630/1‑68 (MQ=255) aacaaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc > 1:15366653/1‑68 (MQ=255) caaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgcgc < 1:24345826/68‑1 (MQ=255) aaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCACTGAATCAGAAACGCTTACAGCGcc < 1:8492881/68‑1 (MQ=255) aaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGcc > 1:25946544/1‑68 (MQ=255) aaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGcc < 1:16569208/68‑1 (MQ=255) aTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCa > 1:26371588/1‑68 (MQ=255) cTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATc > 1:4750039/1‑68 (MQ=255) gAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCaa < 1:9412379/68‑1 (MQ=255) gAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCaa < 1:29772496/68‑1 (MQ=255) | TTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAA > CP009273/2542886‑2543019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |