| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2542953 = | 565 (1.200) | 24 (0.060) | 10/98 | NT | 5.0% | intergenic (+188/+52) | yfeW/yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| ? | CP009273 | 2542983 = | 413 (1.000) | intergenic (+218/+22) | yfeW/yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic | |||||
Only 100 of 688 total aligned reads displayed.
TCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAG > CP009273/2542917‑2543047 | tCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCttt > 1:35027364/1‑68 (MQ=255) cGTGTACATCGCGCACTTGGTCTACAATCTGTGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATc < 1:30822876/67‑1 (MQ=38) cGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa > 1:10341716/1‑68 (MQ=255) cGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa > 1:4458707/1‑68 (MQ=255) gtgtACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa < 1:34545483/67‑1 (MQ=255) gtACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAAt < 1:7355284/67‑1 (MQ=255) gtaagcgtttctgattcattgattaaaggccaggcagtaacattactgactggcctTTAATCAATGaa < 1:31107255‑M2/12‑1 (MQ=255) aCAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa > 1:19375978/1‑68 (MQ=255) aCAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa > 1:541646/1‑68 (MQ=255) cAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa > 1:15997423/1‑67 (MQ=255) cAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGaa > 1:4637136/1‑67 (MQ=255) aCGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCa > 1:10011487/1‑68 (MQ=255) cgcgCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAg > 1:3910139/1‑68 (MQ=255) gcggACTTGGTCAACAATCTGAGTCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGa < 1:37159074/68‑1 (MQ=255) gcgcACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGa > 1:31306769/1‑68 (MQ=255) gcgcACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGa > 1:16537032/1‑68 (MQ=255) cgtttctgattcattgattaaAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGa < 1:2264526‑M1/47‑1 (MQ=255) tttctgattcattgattaaAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaa < 1:12283943‑M1/48‑1 (MQ=255) gcACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaaa < 1:1512180/68‑1 (MQ=255) gcACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaaa < 1:1832892/68‑1 (MQ=255) tctgattcattgattaaagcccaggcagtaacattactgactggcctTTAATCAATGAATCAGAAACg < 1:31830095‑M2/21‑1 (MQ=255) tctgattcaatgattaaaggccaggcagtaacattactgactggcctTTAATCAATGAATCAGAAACg < 1:13364751‑M2/21‑1 (MQ=255) aCTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAAc < 1:28911584/67‑1 (MQ=255) aCTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACg < 1:34813733/68‑1 (MQ=255) aCTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACg < 1:26749044/68‑1 (MQ=255) cTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAAc > 1:38727526/1‑66 (MQ=255) cTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAAc > 1:8193764/1‑66 (MQ=255) ttGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCt < 1:36906812/68‑1 (MQ=255) tGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCtt < 1:27576849/68‑1 (MQ=255) ttcattgattaaAGGCCAGTCAGTAATGTTACTGCGTGGCCTGTAATCAATGATTCAGAAACGCTTa < 1:38497709‑M1/55‑1 (MQ=255) tCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACa > 1:17677660/1‑68 (MQ=255) tCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACa > 1:22249113/1‑68 (MQ=255) aacaaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc > 1:20438715/1‑68 (MQ=255) aacaaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc > 1:11544630/1‑68 (MQ=255) aacaaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc > 1:245562/1‑68 (MQ=255) tgattaaaggccaggcagtaacattactgactggcctTTAATCAATTAATCAGAAACGCTTACAgcgc < 1:56505‑M2/31‑1 (MQ=255) aaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGACACGCTTACAGCGcc > 1:37303878/1‑68 (MQ=255) aaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGcc < 1:26431360/68‑1 (MQ=255) aaTCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGcc > 1:25946544/1‑68 (MQ=255) aaTATGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAAGCAGAAACGCTTACAGCGcc > 1:12467645/1‑68 (MQ=255) ttaaaggccaggcagtaacattactgactggcctTTAATCAATGAATCAGAAACGCTTACAGCGCCAt < 1:29241816‑M2/34‑1 (MQ=255) tCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCAt < 1:28362620/68‑1 (MQ=255) gAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCaa < 1:17799342/68‑1 (MQ=255) GCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAActa < 1:13778674‑M1/68‑2 (MQ=255) GCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACtt < 1:4060086‑M1/68‑1 (MQ=255) GCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACtt < 1:11924048‑M1/68‑1 (MQ=255) GCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACtt < 1:23147831‑M1/68‑1 (MQ=255) GCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACtt < 1:22816767‑M1/68‑1 (MQ=255) GCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACtt < 1:34386224‑M1/68‑1 (MQ=255) GCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACtt < 1:18556880‑M1/68‑1 (MQ=255) GCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACtt < 1:32882256‑M1/68‑1 (MQ=255) GCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACtt < 1:9168177‑M1/68‑1 (MQ=255) GCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACtt < 1:2089432‑M1/68‑1 (MQ=255) CCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTg < 1:25535717‑M1/68‑1 (MQ=255) CAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGt > 1:5042940‑M1/1‑68 (MQ=255) CAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGt > 1:7098833‑M1/1‑68 (MQ=255) CAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGt > 1:32618692‑M1/1‑68 (MQ=255) CAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGt > 1:23546801‑M1/1‑68 (MQ=255) cagtAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCa > 1:11127551/1‑67 (MQ=255) gtAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCg > 1:25168279/1‑68 (MQ=255) aaTGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGc < 1:6176531/65‑1 (MQ=255) aaTGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGAc > 1:8343447/1‑68 (MQ=255) aTGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGaag > 1:35934142/1‑66 (MQ=255) aTGTTACTGCCTGGCCTTTAATCAATGAATAAGAAACGCTTAAAGCGCAATCAACTTGTCCACCGACg > 1:23957166/1‑68 (MQ=255) gTTACTGCCTGGCGTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCGAGCGACGGt > 1:8763492/1‑68 (MQ=255) gTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGt < 1:15681779/68‑1 (MQ=255) gTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGt < 1:12774811/68‑1 (MQ=255) gTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGt > 1:19777251/1‑68 (MQ=255) gTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGt > 1:1418077/1‑68 (MQ=255) gTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGt < 1:35412245/68‑1 (MQ=255) gTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGt > 1:10812376/1‑68 (MQ=255) gTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGt > 1:3374146/1‑68 (MQ=255) gTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGt > 1:17341006/1‑68 (MQ=255) gTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGt > 1:30510668/1‑68 (MQ=255) gTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGAAGGt > 1:21263858/1‑68 (MQ=255) tACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGc > 1:21597875/1‑68 (MQ=255) tACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGc > 1:36376554/1‑68 (MQ=255) tACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGc > 1:10656682/1‑68 (MQ=255) tACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGc > 1:1697156/1‑68 (MQ=255) tACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGc > 1:38286398/1‑68 (MQ=255) tACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGc > 1:29945001/1‑68 (MQ=255) aCTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCg < 1:6572503/68‑1 (MQ=255) aCTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCg > 1:33359445/1‑68 (MQ=255) tGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGaa > 1:9541415/1‑68 (MQ=255) tGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGaa > 1:14699780/1‑68 (MQ=255) tGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGaa < 1:27263444/68‑1 (MQ=255) tGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGaa < 1:18108035/68‑1 (MQ=255) gCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGaaa > 1:24214778/1‑68 (MQ=255) gCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGaaa > 1:7868855/1‑68 (MQ=255) gCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGaaa < 1:30219425/68‑1 (MQ=255) ccTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAaat > 1:27067281/1‑68 (MQ=255) ccTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAaat > 1:21776495/1‑68 (MQ=255) ccTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAaat > 1:36724474/1‑68 (MQ=255) ccTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAaat > 1:16291252/1‑68 (MQ=255) ccTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAaat > 1:28492317/1‑68 (MQ=255) ccTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAaat > 1:32322233/1‑68 (MQ=255) ctggcctTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAaat < 1:37883439‑M2/60‑1 (MQ=255) cctTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAataata > 1:24789931‑M2/4‑67 (MQ=255) cctTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAataata > 1:28079762‑M2/4‑67 (MQ=255) ctTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAg > 1:18970791‑M2/3‑67 (MQ=255) | TCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCAGCGACGGTGCGAAATAATAG > CP009273/2542917‑2543047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |