| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3032389 = | 554 (1.170) | 23 (0.050) | 4/104 | NT | 5.1% | coding (714/897 nt) | xerD | site‑specific tyrosine recombinase |
| ? | CP009273 | 3032408 = | 349 (0.800) | coding (695/897 nt) | xerD | site‑specific tyrosine recombinase | |||||
Only 100 of 643 total aligned reads displayed.
ATCCGCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGTCATCT > CP009273/3032323‑3032453 | tcccagccagcgtgcgcagcagatgacgcgacagaccttctggcaccgtattaaacattatgctgtgc > 1:25465852‑M1/67‑68 (MQ=255)tcccagccagcgtgcgcagcagatgacgcgacagaccttctggcaccgtattaaacattatgctgtgc > 1:35934316‑M1/67‑68 (MQ=255)tcccagccagcgtgcgcagcagatgacgcgacagaccttctggcaccgtattaaacattatgctgtgc > 1:13872435‑M1/67‑68 (MQ=255) ccagccagcgtgcgcagcagatgacgcgacagaccttctggcaccgttttaaacattatggtgtgctg < 1:34653319‑M1/4‑1 (MQ=255) ccagccagcgtgcgcagcagatgacgcgacagaccttctggcaccgtattaaacattatgctgtgctg < 1:16761838‑M1/4‑1 (MQ=255) cGCACCTTGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGt < 1:31228482/68‑1 (MQ=255) cGCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGt < 1:8011038/68‑1 (MQ=255) cGCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGt < 1:17736771/68‑1 (MQ=255) gCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTc > 1:29354416/1‑68 (MQ=255) aCCATGATTTAATAAATGAGTGGCAAAATAGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGa > 1:19118159/1‑68 (MQ=255) aCCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGa > 1:32437610/1‑68 (MQ=255) ccATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGAt < 1:5513088/68‑1 (MQ=255) ccATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGAt > 1:38109211/1‑68 (MQ=255) aTGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATa > 1:20884924/1‑67 (MQ=255) tttAATAAATGTGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCg < 1:8548756/67‑1 (MQ=255) tttAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCg < 1:38944855/67‑1 (MQ=255) tttAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCg < 1:11632330/67‑1 (MQ=255) ttAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGcc > 1:9150678/1‑68 (MQ=255) ataaATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagc > 1:6332386/1‑68 (MQ=255) ataaATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagc < 1:33133519/68‑1 (MQ=255) ataaATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagc < 1:19878033/68‑1 (MQ=255) ataaATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagc > 1:30814029/1‑68 (MQ=255) ataaATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagc > 1:29062895/1‑68 (MQ=255) ataaATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagc > 1:743408/1‑68 (MQ=255) taaATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagc > 1:18226572/1‑67 (MQ=255) taaATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagc > 1:30364792/1‑67 (MQ=255) aaTGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcaca < 1:23159958/68‑1 (MQ=255) aTGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacag < 1:37484609/68‑1 (MQ=255) aTGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacag < 1:15456843/68‑1 (MQ=255) aTGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacag < 1:28616106/68‑1 (MQ=255) tGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:37088595/68‑1 (MQ=255) tGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc > 1:38410137/1‑68 (MQ=255) tGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:484200/68‑1 (MQ=255) tGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:5187706/68‑1 (MQ=255) tGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:9640003/68‑1 (MQ=255) tGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:23389881/68‑1 (MQ=255) tGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:10344764/68‑1 (MQ=255) tGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:20240947/68‑1 (MQ=255) tGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:11797101/68‑1 (MQ=255) tGAGTGGCAAAAGCGGGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:31435249/68‑1 (MQ=255) tgaaaaaGCGTGACGCAACACATTAGGTGAAATATTTTCGCTGTCGATACACGCCAGCACAGCATAAt < 1:5819327/65‑1 (MQ=255) gCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATg > 1:1362063/1‑68 (MQ=255) cAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:22519041/61‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:14322822/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:30549120/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:19410493/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:31895680/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:32800478/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:33937863/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:36613524/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:37732701/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:2375204/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:12350748/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:7745812/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:11334134/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:894475/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:24002272/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:25125475/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:27258209/67‑1 (MQ=255) aaaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:27833939/67‑1 (MQ=255) aaaaGCGGGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGt < 1:36257203/67‑1 (MQ=255) aaaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGttt < 1:34819465/68‑1 (MQ=255) aaGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTa > 1:17409000/1‑68 (MQ=255) aGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTaa > 1:28920264/1‑68 (MQ=255) gCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAAt > 1:20479108/1‑68 (MQ=255) cGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAAt > 1:16210413/1‑67 (MQ=255) cGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAAt > 1:22836673/1‑67 (MQ=255) cGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAAt > 1:8328901/1‑67 (MQ=255) cGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAAt > 1:12801633/1‑67 (MQ=255) gACGCAACACATGCGGTGACAGCTCTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACgg < 1:21805574/68‑1 (MQ=255) cGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGt < 1:22189240/67‑1 (MQ=255) cGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGt < 1:32153918/67‑1 (MQ=255) cGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGt < 1:26648658/67‑1 (MQ=255) cGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGt < 1:39108963/67‑1 (MQ=255) cGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGt < 1:35492877/67‑1 (MQ=255) cGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGt < 1:18345233/67‑1 (MQ=255) gCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTg > 1:29470962/1‑67 (MQ=255) gCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGc < 1:258482/68‑1 (MQ=255) gCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGc < 1:4255643/68‑1 (MQ=255) gcaccgtattaaacattatgctgtGCTGTCGATACCCGCCAGCACCGCATAATGTTTAATAcggttgc < 1:9440350‑M1/44‑4 (MQ=255) accgtattaaacattatgctgtGCTGTCGATACCCGCCAGCCCAGCATAATGTTTAATACGGTGCCAg < 1:15864215‑M1/46‑1 (MQ=255) accgtattaaacattatgctgtGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAg < 1:10995144‑M1/46‑1 (MQ=255) accgtattaaacattatgctgtGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAg < 1:27579795‑M1/46‑1 (MQ=255) accgtattaaacattatgctgtGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAg < 1:24606083‑M1/46‑1 (MQ=255) accgtattaaacattatgctgtGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAg < 1:13134504‑M1/46‑1 (MQ=255) acacATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAg < 1:35094169/68‑1 (MQ=255) acaTGCGGTGACAGCTTTTCGCTGTCGATACCCGCcagcacagc < 1:16653513/44‑1 (MQ=255) cGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAgg > 1:12091947/1‑65 (MQ=255) ggTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAgg > 1:29938714/1‑64 (MQ=255) ggTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGACAGAAGGTCt > 1:34208244/1‑67 (MQ=255) ggTGACAGCTTTTCGCTGTCGATACCCGCCAGAACAGCATAATGTTTAAAACGGTGCCAGAAgg > 1:14711527/1‑64 (MQ=255) tGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTc > 1:33469135/1‑68 (MQ=255) tGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTc > 1:26025591/1‑68 (MQ=255) cTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGTCa > 1:28328122/1‑68 (MQ=255) ttttCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGt < 1:2137201/65‑1 (MQ=255) ttttCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGt < 1:18773470/65‑1 (MQ=255) ttttCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGTCa < 1:7206487/67‑1 (MQ=255) ttttCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGTCa < 1:17081093/67‑1 (MQ=255) GCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGTCATct < 1:26930647‑M1/65‑1 (MQ=255) GCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGTCATct < 1:1000056‑M1/65‑1 (MQ=255) | ATCCGCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGTCATCT > CP009273/3032323‑3032453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |