New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3851553 =461 (0.980)41 (0.110) 10/86 NT 12.0% coding (212/1494 nt) yidJ sulfatase/phosphatase superfamily protein
?CP009273 3851602 = 248 (0.680)coding (163/1494 nt) yidJ sulfatase/phosphatase superfamily protein

Only 100 of 700 total aligned reads displayed.

CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA  >  CP009273/3851537‑3851669
                                                                 |                                                                   
 cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg                                                                  <  1:805989‑M2/4‑1 (MQ=255)
 cggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg                                                                  <  1:13797472‑M2/4‑1 (MQ=255)
 cggtgtgtacgcctgcacgggccggactatttaccggtatctacgctacccagtccggcccgtgCAgg                                                                  <  1:3508305‑M2/4‑1 (MQ=255)
   gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGc                                                                 <  1:12127433/67‑1 (MQ=255)
   gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg                                                                <  1:22761027/68‑1 (MQ=255)
   gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg                                                                <  1:23248230/68‑1 (MQ=255)
    tttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAGGCg                                                                <  1:20110687‑M2/6‑1 (MQ=255)
     cGTTGTTGGGCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt                                                               <  1:23860084/67‑1 (MQ=255)
      gttgttGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTAc                                                             >  1:9472445/1‑68 (MQ=255)
      gttgttGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTAc                                                             >  1:5413953/1‑68 (MQ=255)
         gttgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa                                                          <  1:18406683/68‑1 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCTTACAAAcc                                                        <  1:6261267/68‑1 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                        >  1:25515265/1‑68 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                        <  1:25136085/68‑1 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                        >  1:34034732/1‑68 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                        <  1:36731646/68‑1 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                        >  1:38813581/1‑68 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                        >  1:10625024/1‑68 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                        >  1:15909060/1‑68 (MQ=255)
           tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                        <  1:14901551/68‑1 (MQ=255)
           gcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAGGCGTACAAAcc                                                        <  1:16641594‑M2/14‑1 (MQ=255)
           gcctgcacggcccggactatttaccggaatctacgctaacccgtccggcccgtgCAGGCGTACAAAcc                                                        <  1:883121‑M2/14‑1 (MQ=255)
            ggTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg                                                       >  1:31986884/1‑68 (MQ=255)
            cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCGGGCGTACAAACCg                                                       <  1:17384870‑M1/64‑1 (MQ=255)
            cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg                                                       <  1:5620246‑M1/64‑1 (MQ=255)
            cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg                                                       <  1:17618389‑M1/64‑1 (MQ=255)
            cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg                                                       <  1:26433590‑M1/64‑1 (MQ=255)
            cctgCACGGGCCGGACTGGTTAGCGGAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg                                                       <  1:29436500‑M1/64‑1 (MQ=255)
              tgcacgggccggactatttaccggtatctccgctaaccaccccggcccgtgCAGGCGTACAAACCGGt                                                     <  1:310530‑M2/17‑1 (MQ=255)
              tgcacgggccggactatttaccggtatctacgctaaccaggccggcccgtgCAGGCGTACAAACCGGt                                                     <  1:200173‑M2/17‑1 (MQ=255)
              tgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCGCGTGCAGGCGTACAAACCGGt                                                     <  1:5073764‑M1/66‑1 (MQ=255)
              tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                     >  1:33026820/1‑68 (MQ=255)
              tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                     >  1:25786257/1‑68 (MQ=255)
              tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                     >  1:1475094/1‑68 (MQ=255)
              tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                     >  1:30499645/1‑68 (MQ=255)
                CACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa                                                   <  1:6643059‑M1/68‑1 (MQ=255)
                CACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa                                                   <  1:14059239‑M1/68‑1 (MQ=255)
                 tCGGGCCGGACGGGTTAGCGTAGATACCCGTATATAGTCCGGCCCGTGCAGGCGTACAATCCGGTGa                                                   <  1:4652539‑M1/66‑1 (MQ=255)
                 acgggccggactatttaccggtatctacgctaacccgcccggcccgggCAGGCGTACAAACCGGTGa                                                   <  1:15173751‑M2/19‑1 (MQ=255)
                 acgggccggacaatttaccggtatctacgcacacccggccggcccgggCAGGCGTACAAACCGGTGa                                                   <  1:15474649‑M2/19‑1 (MQ=255)
                 ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTTCAAACCGGTGa                                                   <  1:11162704‑M1/67‑1 (MQ=255)
                 ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACACACCGGTGa                                                   <  1:19749366‑M1/67‑1 (MQ=255)
                 ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa                                                   <  1:8539115‑M1/67‑1 (MQ=255)
                 ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGa                                                   <  1:33695606‑M1/67‑1 (MQ=255)
                 ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCCTACAAACCGGTGa                                                   <  1:7882493‑M1/67‑1 (MQ=255)
                    GGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg                                               <  1:24370290‑M1/68‑1 (MQ=255)
                      ccggactatttaccggtatctacgctaaccagcccggcccgtgCAGGCGTACAAACCGGTGAACAGgt                                             <  1:27930399‑M2/25‑1 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATATTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:16134820‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAATCCGGTGAACAGgt                                             <  1:18537762‑M1/68‑1 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:24792596‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:6940038‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:13189568‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:34348752‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:9059547‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:13041706‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:30044796‑M1/1‑67 (MQ=255)
                      CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt                                             <  1:25343380‑M1/68‑1 (MQ=255)
                       CGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgtg                                            >  1:37171667‑M1/1‑68 (MQ=255)
                       CGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgt                                             >  1:14589305‑M1/1‑67 (MQ=255)
                           CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg                                         <  1:36202473‑M1/67‑1 (MQ=255)
                           CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg                                         <  1:9230560‑M1/67‑1 (MQ=255)
                               ttAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAACCCGGTGAACAGGTGTAGTCGGa                                    >  1:10873694/1‑68 (MQ=255)
                               ttAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGCACAGGTGTAGGCGGa                                    >  1:38188289/1‑68 (MQ=255)
                                tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGaa                                   >  1:23560437/1‑68 (MQ=255)
                                tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                    <  1:7363260/67‑1 (MQ=255)
                                tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                    <  1:16500662/67‑1 (MQ=255)
                                tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                    <  1:27312120/67‑1 (MQ=255)
                                    gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:31795221/1‑68 (MQ=255)
                                    gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:31306726/1‑68 (MQ=255)
                                    gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:4314181/1‑68 (MQ=255)
                                    gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:11848031/1‑68 (MQ=255)
                                    gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:37713008/1‑68 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGc                            <  1:28294594/66‑1 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCg                           <  1:35813565/67‑1 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa                          >  1:32753303/1‑68 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa                          >  1:18981975/1‑68 (MQ=255)
                                         tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa                          >  1:24130816/1‑68 (MQ=255)
                                          aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa                         >  1:2122143/1‑68 (MQ=255)
                                          aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa                         >  1:2254078/1‑68 (MQ=255)
                                                  aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                 >  1:32441212/1‑68 (MQ=255)
                                                  aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                 >  1:11487069/1‑68 (MQ=255)
                                                  aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                 >  1:37510771/1‑68 (MQ=255)
                                                    agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg                >  1:29202103‑M2/14‑67 (MQ=255)
                                                      tccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc              >  1:5990850‑M2/12‑67 (MQ=255)
                                                       ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCTGAATTAAAGCGAATACCttccgcag             >  1:19838721‑M2/11‑65 (MQ=255)
                                                       ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgccg             >  1:19480622‑M2/11‑67 (MQ=255)
                                                       ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgccg             >  1:29632429‑M2/11‑67 (MQ=255)
                                                       ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc              <  1:16864770‑M2/56‑1 (MQ=255)
                                                       ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgcc              <  1:270248‑M2/56‑1 (MQ=255)
                                                       ccggcccgtgCAGGCGTACAAACCGGTGAACAGGGGGCGGCGGAATTAAAGCGAATACCTTccgcc              <  1:22280431‑M2/56‑1 (MQ=255)
                                                           cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:28831166‑M2/7‑67 (MQ=255)
                                                           cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:20675237‑M2/7‑67 (MQ=255)
                                                           cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:7592013‑M2/7‑67 (MQ=255)
                                                           cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:36529439‑M2/7‑67 (MQ=255)
                                                           cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         <  1:12585895‑M2/61‑1 (MQ=255)
                                                           cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACATTCCGCCGCCAg         >  1:26121534‑M2/7‑67 (MQ=255)
                                                            ccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:2184979‑M2/6‑66 (MQ=255)
                                                            ccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:10047013‑M2/6‑66 (MQ=255)
                                                              gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa     <  1:34793901‑M2/65‑1 (MQ=255)
                                                                gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc   >  1:35435257‑M2/2‑68 (MQ=255)
                                                                 |                                                                   
CGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA  >  CP009273/3851537‑3851669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.