| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 727866 | 0 (0.000) | 9 (0.020) | 4/96 | NT | 100% | coding (2828/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 729698 | NA (NA) | pseudogene (110/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
Only 100 of 111 total aligned reads displayed.
GCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAT > CP009273/729681‑729764 | gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:9793983/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:20074930/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:22921936/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:25553308/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:2569252/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:15889353/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:27099437/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:14558621/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:1436410/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:32170877/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:33819369/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:37762855/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:38476272/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:5897158/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:5940422/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:11864236/1‑68 (MQ=33)gCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg > 1:11144457/1‑68 (MQ=33) ccGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg < 1:14638137/67‑1 (MQ=33) ccGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACgg < 1:18182230/67‑1 (MQ=33) cGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGgag < 1:26697053/68‑1 (MQ=35) cGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGgag < 1:23666106/68‑1 (MQ=35) cGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGga < 1:9191936/67‑1 (MQ=35) gATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCAGGGCAGGCTGACGGAGaa > 1:9217364/1‑68 (MQ=25) aTAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:18753136/1‑68 (MQ=35) aTAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:20578578/1‑68 (MQ=35) aTAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:3759618/1‑68 (MQ=35) aTAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaa < 1:28720483/67‑1 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa < 1:10930755/67‑1 (MQ=35) tAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaa > 1:36781776/1‑67 (MQ=35) aaCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaaa > 1:24136859/1‑67 (MQ=35) aaCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaaa > 1:31264038/1‑67 (MQ=35) aaCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGaaaa > 1:751861/1‑67 (MQ=35) aaCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAAc < 1:18408207/68‑1 (MQ=35) aaCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAAc < 1:26000213/68‑1 (MQ=35) aCCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAAcc > 1:38345213/1‑68 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:18842476/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:5175425/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:28305494/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:291865/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:16035239/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:30988929/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:6022746/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:32265522/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:20753765/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:20671275/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCg > 1:140025/1‑67 (MQ=35) cGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa < 1:34759834/68‑1 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:3217514/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:38317002/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:2974502/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:5472497/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGa > 1:27635563/1‑67 (MQ=35) gTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAc < 1:9177095/68‑1 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCCCGGCAGGCTGCCGGAGAACACCGAcc > 1:36902906/1‑67 (MQ=11) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:10763151/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:38330457/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:4843460/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc < 1:21267765/67‑1 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:16857142/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:23247136/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGAcc > 1:17077794/1‑67 (MQ=35) aTCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAAACGAcc > 1:22602068/1‑67 (MQ=25) tCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTc < 1:5885128/68‑1 (MQ=35) tCGCCCGTGACGCGCACTATCTCTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTc < 1:23429885/68‑1 (MQ=255) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCCCGGCAGGCTGACGGAGAAAACCGACCTCa > 1:35570388/1‑68 (MQ=25) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGCCCTCa > 1:31739298/1‑68 (MQ=25) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGCCCTCa > 1:13059668/1‑68 (MQ=25) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:12847665/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:12106824/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:753490/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:8349115/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:5778094/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:1181032/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:1378748/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:11121956/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:14294795/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:35326077/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:19223568/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:18375103/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:22137308/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:22402910/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa < 1:24884880/68‑1 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:26377977/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:15527025/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:14943806/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:30743920/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:31200419/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:32401719/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:14186655/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:36604454/1‑68 (MQ=35) cGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACAGACCTCa > 1:23476820/1‑68 (MQ=25) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGAGGGAGAAAACCGCCCTCa > 1:18068339/1‑67 (MQ=255) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTcc > 1:8005358/1‑66 (MQ=25) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:1495723/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:12671807/1‑67 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAt < 1:5015578/68‑1 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAt < 1:32377003/68‑1 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAt < 1:9624677/68‑1 (MQ=35) gCCCGTGACGCGCACTATCTTTACCGGTATCACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCa > 1:22293630/1‑67 (MQ=255) cccGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAt > 1:21162888/1‑67 (MQ=35) | GCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACGGAGAAAACCGACCTCAT > CP009273/729681‑729764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |