BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 577278	266 (0.750)	19 (0.060)	9/96	NT	7.7%	pseudogene (163/438 nt)	tfaD	pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related
*	?	CP009273	= 1426905	NA (NA)	19 (0.060)	9/96	NT	7.7%	coding (238/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein

Only 100 of 176 total aligned reads displayed.

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/577205‑577278

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggaagCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  <  CP009273/1426905‑1426839

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGC                                                                           <  1:25867065/68‑1

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCG                                                                            >  1:15506177/1‑67

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCG                                                                            >  1:15913025/1‑67

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCG                                                                            >  1:8202460/1‑67

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:9151556/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:20638064/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:12554279/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:24837036/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:13809854/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:19132474/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:3949482/1‑68

   GTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGG                                                                        >  1:22471614/1‑68

    TCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGA                                                                       >  1:16284931/1‑68

            CGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGT                                                               <  1:11041966/68‑1

            CGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGT                                                               <  1:23206171/68‑1

             GCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGTC                                                              <  1:3780480/68‑1

               GTTATTTATTTCTGAACTCGGTCCGTTACCGCAAAATGTTACCTGGTTATCGCCGGAAGCCACGTCA                                                             <  1:19656644/67‑1

                    TTATTTCTGACCTCGGCCCGATACCGGAAAATGTACCCTGGTAATCGCCGGAAGCCACGTCATAAACC                                                       <  1:25826630/68‑1

                      ATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGTCATAAACCGT                                                     <  1:26803750/68‑1

                         TCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGTCATAAACCGTTTT                                                  >  1:17520453/1‑68

                              ACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGTCATAAACCGTTTTACCCC                                             <  1:28508718/68‑1

                              ACTCGGGCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGCCACGTCATAAACCGTTTTACCCC                                             <  1:4334610/68‑1

                                 CGGTCCGTTACCGTAAAATGTTACCTGGTTATCGCCGGAAGCCACGTCATAAACCGTTTTACCCCGAT                                          <  1:13885346/68‑1

                                                                 CGCCGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATC           <  1:324223/67‑1

                                                                 CGCCGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATC           <  1:28051205/67‑1

                                                                 CGCCGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATC           <  1:6911685/67‑1

                                                                    CGGTAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:28751614/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCACCGAGATGCCACGATGACTCATCACT        <  1:20523198/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTG       <  1:22491782/68‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTG       <  1:10643409/68‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:26906787/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:3150779/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:26086671/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:25095122/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:28929080/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:22311563/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:24229765/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:27428673/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:23371944/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:25936050/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:3663420/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:10171806/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:11077507/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:8291422/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:8255624/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:12590925/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:769966/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:7661021/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:14849031/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:14942126/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:15156736/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:15327980/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:16577613/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:17226563/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:17422596/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:4097615/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:18144541/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:19312951/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:19569760/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:20781871/67‑1

                                                                    CGGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:21446019/67‑1

                                                                    CGGAAGCCACGGCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACT        <  1:10171821/67‑1

                                                                     GGAAGGCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:1114649/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACGCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:20267704/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:25776604/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:9650143/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:8761947/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:11949093/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:12444238/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:7813033/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:14502621/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:6674333/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:6157597/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:5832509/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:5460571/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      >  1:5097948/1‑68

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:4797644/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:1843363/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:26049679/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:21616583/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:26186939/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:21898823/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:22587445/68‑1

                                                                     GGAAGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGT      <  1:25445970/68‑1

                                                                        AGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGA   <  1:26590517/68‑1

                                                                        AGCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGA   <  1:2719806/68‑1

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:14623820/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:26284096/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:24680174/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:13612642/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:7523809/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:21321394/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:27393947/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:23989567/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:23092181/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:22633683/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:16170834/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:17579271/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  >  1:21615478/1‑68

                                                                         GCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCA          >  1:13005483/1‑60

AGCGTCAGGGGACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/577205‑577278

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggaagCCACGTCATAAACCGTTTTACCCCGATGATCTTCAACGAGATGCCACGATGACTCATCACTGTTGAA  <  CP009273/1426905‑1426839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.